Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme85204g00001 ATTGGTTTTGGATTTGTACTTTGGTGGAGACACAAGCATAATCAACAAGCATTCTTTGATGTCAAAGATCGGCATCACGAAGAAGTTTACCTTGGAAACTTGAAGAGGTTTCCATTCAGAGAACTTCAAATTGCTACAAATAACTTCAGCAGCAAAAACTTAGTCGGAAAAGGTGGTTTTGGAAATGTCTACAAAGGAATTCTTTCGGATGGAACTGTTGTAGCTGTGAAGAGGCTTAAAGATGGCAATGCAGTTGGAGGAGAGATTCAATTTCAGACTGAAGTTGAAATGATTAGCTTAGCAGTGCATAGAAATCTCCTTAGACTTTATGGATTTTGCATGACATCAAATGAAAGGCTTTTAGTTTATCCTTACATGTGCAATGGAAGTGTCGCATCTCGTTTGAAGGGTAAGTTCATTTGCAAA 426 0.3779 IGFGFVLWWRHKHNQQAFFDVKDRHHEEVYLGNLKRFPFRELQIATNNFSSKNLVGKGGFGNVYKGILSDGTVVAVKRLKDGNAVGGEIQFQTEVEMISLAVHRNLLRLYGFCMTSNERLLVYPYMCNGSVASRLKGKFICK 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme85204g00001 142 Pfam Protein tyrosine and serine/threonine kinase 52 136 IPR001245 GO:0004672|GO:0006468
Trme85204g00001 142 FunFam Somatic embryogenesis receptor kinase 1 18 125 - -
Trme85204g00001 142 SUPERFAMILY Protein kinase-like (PK-like) 25 139 IPR011009 -
Trme85204g00001 142 ProSitePatterns Protein kinases ATP-binding region signature. 55 77 IPR017441 GO:0005524
Trme85204g00001 142 ProSiteProfiles Protein kinase domain profile. 49 142 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme85204g00001 142 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 31 135 - -
Trme85204g00001 142 Gene3D Phosphorylase Kinase; domain 1 18 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme85204g00001 Trme-Chr85204 132 750 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme85204g00001 1 140 Receptor kinase-like Gene Family AT5G16000 80.142 3.01e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Trme85204g00001 PK_Tyr_Ser-Thr 8e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme85204g00001 - - gmx:100798412 266.159