Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8516g00001 GTAACAAATCAGGTATTTAGGTATGCGAAGAAAGCTGGAGCAAGCTACATAAACAAGCCAAAAATGAGACACTACGTGCACTGCTATGCATTGCATTGTTTAGATGAGGAGGTTTCCAATGAGCTGAGAAGGGGTTTCAAGGAAAGAGGGGAGAACGTCGGCGCGTGGAGGCAAGCTTGTTACAAGCCATTAGTGGCGATCGCTGCACGTCAAGGATGGGATATTGATGCAATATTTAACGCGCATCCGCGTCTTTCCATATGGTACGTGCCAACAAAACTCCGTCAGCTTTGTCATGCTGAGAGAAACGGTGCTGCAGCTTCGAGCTCCGTCTCTGTTGGAACGACCCACCTTCCTTTCTAA 363 0.4793 VTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEVSNELRRGFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVPTKLRQLCHAERNGAAASSSVSVGTTHLPF 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8516g00001 120 Gene3D Protein LEAFY 1 112 IPR038276 -
Trme8516g00001 120 PANTHER PROTEIN LEAFY 1 119 IPR002910 GO:0003677|GO:0006355
Trme8516g00001 120 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 1 106 IPR035209 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8516g00001 Trme-Chr8516 469 831 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8516g00001 1 114 Orphan Transcription Factor Family AT5G61850 85.088 7.74e-68 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Trme8516g00001 C_LFY_FLO 2.8e-67 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8516g00001 - - gmx:100798196 242.276