Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme85168g00001 CACTTAACTGCTAAGAGTGATGTTTACAGTTTCGGAGTTGTGTTACTCGAGATTTTAACAGGAAGAAGATCGATGGACAAGAAGCGTCCAAGCGGGGAACAAAATCTTGTTTCATGGGCTAGACCTTATTTAGCTGACAAGCGAAAACTTTACCAACTAGTTGATCCTCGCTTGGAACTAAACTATTCTTTAAAAGCTGTGCAGAAAATTGCTCAGTTAGCTTATAGTTGCCTCAGTAGAGACCCTAAATGCCGTCCAAACATGGACGAAGTTGTGAACGCTTTGACACCATTGCAGGATCTTAACGACTTTGCTATCTTGTCTTATCACTCTCGTTTATCTCAACAAGGGAGAAGAAAGAAGAAACCAGATGGAACTCCGCATATCACTTATACACATTCCAAGAGCATGAGGGCTTCGCCTTTGAATACCGGAAAACACCTACGATGA 450 0.4178 HLTAKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLADKRKLYQLVDPRLELNYSLKAVQKIAQLAYSCLSRDPKCRPNMDEVVNALTPLQDLNDFAILSYHSRLSQQGRRKKKPDGTPHITYTHSKSMRASPLNTGKHLR 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme85168g00001 149 SUPERFAMILY Protein kinase-like (PK-like) 2 105 IPR011009 -
Trme85168g00001 149 MobiDBLite consensus disorder prediction 113 149 - -
Trme85168g00001 149 Gene3D Transferase(Phosphotransferase) domain 1 1 115 - -
Trme85168g00001 149 ProSiteProfiles Protein kinase domain profile. 1 113 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme85168g00001 149 Pfam Protein tyrosine and serine/threonine kinase 2 95 IPR001245 GO:0004672|GO:0006468
Trme85168g00001 149 PANTHER OS01G0588500 PROTEIN-RELATED 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme85168g00001 Trme-Chr85168 111 560 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme85168g00001 1 98 Receptor kinase-like Gene Family AT3G58690 54.082 5.67e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trme85168g00001 PK_Tyr_Ser-Thr 5.2e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme85168g00001 - - aprc:113848012 269.626