Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme851449g00001 TTATTCAAGGTTCACGAGTTGAGGAAGAAAACCAAAGCTGATCTCTTTGCTCATCTCAAAGATCTCAAGGCTGAACTCGCCTTCCTCGGTGTTGCTAAGGTCATCGGTGGTGCACCCAACAAGCTCTCCAAGATTAAGGTGGTGAGACTATCTATTGCTCAGGTTTTGACAATGATTTCTCATAAACAGAAGGCTGCATTGAGGGAAGTTTACAAGAACAAGAAGTATTTGCCAC 235 0.434 LFKVHELRKKTKADLFAHLKDLKAELAFLGVAKVIGGAPNKLSKIKVVRLSIAQVLTMISHKQKAALREVYKNKKYLP 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme851449g00001 78 PANTHER 60S RIBOSOMAL PROTEIN L35 3 78 IPR045059 GO:0000463|GO:0022625
Trme851449g00001 78 NCBIfam 50S ribosomal protein L29 6 62 IPR001854 GO:0003735|GO:0005840|GO:0006412
Trme851449g00001 78 Gene3D - 1 75 IPR036049 GO:0003735|GO:0005840|GO:0006412
Trme851449g00001 78 SUPERFAMILY Ribosomal protein L29 (L29p) 2 63 IPR036049 GO:0003735|GO:0005840|GO:0006412
Trme851449g00001 78 Pfam Ribosomal L29 protein 6 62 IPR001854 GO:0003735|GO:0005840|GO:0006412
Trme851449g00001 78 FunFam 60S ribosomal protein L35 1 75 - -
Trme851449g00001 78 Hamap 50S ribosomal protein L29 [rpmC]. 2 62 IPR001854 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme851449g00001 Trme-Chr851449 1 235 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme851449g00001 2 78 Cytoplasmic Ribosomal Protein Gene Family AT2G39390 77.922 6.53e-36 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme851449g00001 K02918 - rvl:131314800 127.487