Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme85008g00001 GCTCACGGTGCTGGCCATGTCAATCCACAAAAAGCACTTTCTCCTGGCCTTGTTTATGATGCTTCAACAAGAGATTACATGACATTCTTGTGCTCCTTAAACTACAACCCTGAGCAAATCCAACTCATTGTTAAGCGACGCGGTGTCAATTGTACGAGGAAGTTCTCTAATCCTGGTCAATTGAATTACCCGTCTTTCTCAATTGTGTTTTCGGGCAAGAGGGTCGTTAGATACACGCGCATCTTGACAAATGTTGGCGAGGCAGGTTCTATCTATAATGTGGTGGCTGACGGGCCATCTACGGTGGGGATAACAGTGAAGCCGAGTAGGCTTGTGTTTGAGAAAGTAGGGGAAAGAAAAAGGTACACGGTTACCTTTGTGTCTAAGAAAGGTGCTGGTGCAGTTAGGAATGGATTTGGTAGCATCCTATGGAGCAATGCACAACACCAAGTTAGAAGCCCAGTTGCTTTTGCTTGGACAAATTTGTGA 489 0.454 AHGAGHVNPQKALSPGLVYDASTRDYMTFLCSLNYNPEQIQLIVKRRGVNCTRKFSNPGQLNYPSFSIVFSGKRVVRYTRILTNVGEAGSIYNVVADGPSTVGITVKPSRLVFEKVGERKRYTVTFVSKKGAGAVRNGFGSILWSNAQHQVRSPVAFAWTNL 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme85008g00001 162 Pfam Fibronectin type-III domain 60 156 IPR041469 -
Trme85008g00001 162 Gene3D Peptidase S8/S53 domain 2 26 IPR036852 GO:0004252|GO:0006508
Trme85008g00001 162 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 2 156 IPR045051 -
Trme85008g00001 162 Gene3D - 30 159 - -
Trme85008g00001 162 FunFam Subtilisin-like protease SBT1.5 30 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme85008g00001 Trme-Chr85008 2 490 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme85008g00001 1 159 Subtilisin-like Serine Gene Family AT2G05920 67.500 7.47e-73 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme85008g00001 - - gmx:100797543 264.618