Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme84723g00001 ATGTGCGGACAAGCATGCTCTTGTGTGAATGCAGTACTAGTAATGGTTCTCTTGGAATCTATTGATAGTTTTATCATGCTTTGTTTCGTTGATGCCAAGAGGGCGTTCTCAAGAGAAGATCAACAAATTTCTGGCAATTCGAGAACTGGAAACTCCAATTCTGGTATGAATTCGGGTAATGGTGGGAATATGAGGACCAAAAAGATATTTGTTGGAGGGTTACCTCCCACTCTGGCTGAAGAAAAATTTCGTCAGTACTTTGAGGCTTATGGACTTGTAACCGATGTTGTAGTCATGTATGACCAGAATACTGGACGACCACGAGGATTTGGGTTTATTACATTTGATACTGAGGAGGCAGTTGATAGGGTTTTGCACAAGACATTTCATGATTTAAATGGTAAACAAGTAGAGGTAAAGCGTGCACTTCCAAAGGATGCCAATCCAGGTGCAAATAGCCGAATGATGGGTGGTGCTGGAGGTGGTAGTGCTGGAATGGGTGGTTACCAAGGGTACGGGGCTTCTGGTGGCA 532 0.4361 MCGQACSCVNAVLVMVLLESIDSFIMLCFVDAKRAFSREDQQISGNSRTGNSNSGMNSGNGGNMRTKKIFVGGLPPTLAEEKFRQYFEAYGLVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDLNGKQVEVKRALPKDANPGANSRMMGGAGGGSAGMGGYQGYGASGG 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme84723g00001 177 MobiDBLite consensus disorder prediction 40 63 - -
Trme84723g00001 177 SMART rrm1_1 68 140 IPR000504 GO:0003723
Trme84723g00001 177 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 144 IPR000504 GO:0003723
Trme84723g00001 177 CDD RRM2_Hrp1p 68 145 - -
Trme84723g00001 177 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 128 IPR000504 GO:0003723
Trme84723g00001 177 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 30 173 - -
Trme84723g00001 177 SUPERFAMILY RNA-binding domain, RBD 66 173 IPR035979 GO:0003676
Trme84723g00001 177 FunFam heterogeneous nuclear ribonucleoprotein 1 62 177 - -
Trme84723g00001 177 Gene3D - 57 170 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme84723g00001 Trme-Chr84723 1 718 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme84723g00001 65 130 Eukaryotic Initiation Factors Gene Family AT2G36660 38.806 1.63e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme84723g00001 K14411 - gmx:100811267 213.772