LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme84704g00001	GTGAATCAACTCGATTTTAACACGCCGTTTAAAAGGAGTGAGTCAGACTCAGTTGAAAAGTCAAACTCGTTCGTGGGAACCGAGGATTACGTGGCACCTGAAGTTATTTCAGGTCATGGACACAACTTAAGTGTTGATTGGTGGTCATATGGCGTCGTTTTGTATGAGTTGTTTTATGGAACGACGCCGTTTAGTAGTGCTAATAGAAAGGAAACGTTTCACAAGATTTTAAATGTGGAGCCTGAACAAAAAGGTGAAACGACACCGTTGAAGGATTTGATTGCTAAGTTGCTTGAGAAAGATCCTGACCGTAGGATTCAAGTTGATGAAATAAAGGGTCATGATTTCTTTAAAGGTGTGAAGTGGGATACGGTGTTGGAAATTGCGCGTCCACCGCATATTCCTCAAAATGAAGTTGTGGACAGAGCAGGGTTTTCTAGAAAAGATGTTGAGTCCTTTGTCCATGGAATATTTTTTCCAAAAAATAAAAATGATAATGNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNAAGATGGAAAGGAAAAGGAGAAGGAGAATGATGATAGTAGTAATAATAAGAATGTGTGGGTTGAGAAGTTGGGTCAGAGTCAAACTAAAGATGAGAATTTTTTGATTTTTTGA	648	0.3642	VNQLDFNTPFKRSESDSVEKSNSFVGTEDYVAPEVISGHGHNLSVDWWSYGVVLYELFYGTTPFSSANRKETFHKILNVEPEQKGETTPLKDLIAKLLEKDPDRRIQVDEIKGHDFFKGVKWDTVLEIARPPHIPQNEVVDRAGFSRKDVESFVHGIFFPKNKNDNXXXXXXXXXXXXXDGKEKEKENDDSSNNKNVWVEKLGQSQTKDENFLIF	215

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme84704g00001	215	PANTHER	FLIPPASE KINASE 1-RELATED	18	142	-	-
	Trme84704g00001	215	FunFam	Serine/threonine-protein kinase OXI1	19	136	-	-
	Trme84704g00001	215	SUPERFAMILY	Protein kinase-like (PK-like)	17	148	IPR011009	-
	Trme84704g00001	215	SMART	serkin_6	1	117	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trme84704g00001	215	ProSiteProfiles	Protein kinase domain profile.	1	117	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trme84704g00001	215	Gene3D	Transferase(Phosphotransferase) domain 1	16	136	-	-
	Trme84704g00001	215	Pfam	Protein kinase domain	19	117	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trme84704g00001	215	MobiDBLite	consensus disorder prediction	195	211	-	-
	Trme84704g00001	215	ProSiteProfiles	AGC-kinase C-terminal domain profile.	118	215	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Trme84704g00001	215	MobiDBLite	consensus disorder prediction	179	194	-	-
	Trme84704g00001	215	MobiDBLite	consensus disorder prediction	169	211	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme84704g00001	Trme-Chr84704	105	752	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme84704g00001	11	166	AGC Kinase Gene Family	AT4G13000	62.420	3.49e-61	194

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Trme84704g00001		Pkinase	1.5e-22	CL0016