Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme84684g00001 ATGTTGAAATTTGTGTGTCAAAATGACACAACTCTTACTTCACAAACTGGGCATAAAGAATGGGTAACTGAAGTGAATGTTCTAGGTATTGTTGAGCATCACAATCTTGTGAAACTAGTGGGCTATTGTGCTGATGATGATGAAAGAGGAATCCAACGGCTTTTGATATATGAATATATGCCCAACGGAAGCGTGGAACACCATTTATCCCCACGATCAGAAAATCCTCTCTCATGGAGTAGGAGACTGAAAATAGCCCAAGACGCTGCTCGTGGCTTAACATACCTGCATGAGGAAATGGATTTTCAGATAATTTTCAGAGATTTCAAATCTTCGAATATCCTTCTGGACGAGCAGTGGAATGCAAAGCTGTCTGACTTCGGATTAGCAAGATTGGGACCATCTGATGGGTTAACTCA 419 0.4105 MLKFVCQNDTTLTSQTGHKEWVTEVNVLGIVEHHNLVKLVGYCADDDERGIQRLLIYEYMPNGSVEHHLSPRSENPLSWSRRLKIAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDEQWNAKLSDFGLARLGPSDGLT 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme84684g00001 139 PANTHER OS01G0588500 PROTEIN-RELATED 12 137 - -
Trme84684g00001 139 Gene3D Transferase(Phosphotransferase) domain 1 61 138 - -
Trme84684g00001 139 FunFam Os07g0541700 protein 60 137 - -
Trme84684g00001 139 ProSiteProfiles Protein kinase domain profile. 1 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme84684g00001 139 Pfam Protein tyrosine and serine/threonine kinase 14 132 IPR001245 GO:0004672|GO:0006468
Trme84684g00001 139 SUPERFAMILY Protein kinase-like (PK-like) 16 137 IPR011009 -
Trme84684g00001 139 SMART tyrkin_6 2 139 IPR020635 GO:0004713|GO:0006468
Trme84684g00001 139 Gene3D Phosphorylase Kinase; domain 1 5 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme84684g00001 Trme-Chr84684 1 725 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme84684g00001 17 134 Glycoside Hydrolase AT3G07070 53.719 1.97e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trme84684g00001 PK_Tyr_Ser-Thr 3.1e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme84684g00001 - - gmx:100817276 242.662