Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8451g00001 GAGTTTGAAGAACTTAACTTGGGTTCTCTACCACCAACTTTTCAAGGAATGAAAGTGTATAGCACTGATGAAAAGGAATTGATTATGGAACTATCAATGAAATGGGCTGGGAATCCTAACATTATAGTTGCAGTCAAAGCATTTGGATTGCGCGCCACGGTTCAGGTTGTTGATTTGCAAGTATTTGCATCTCCACGCATAACGTTGAAGCCTTTGGTCCCAAGTTTTCCTTGTTTCGCCAATATTTACGTGTCTCTCATGGAGAAGCCACATGTCGATTTTGGACTAAAACTGCTTGGAGCTGATGCAATGGCTATTCCTGGTCTTTACAGGATTGTCCAGGAAATTATAAAAGAACAAGTTGCAAAAATGTATTTGTGGCCTAAGGCCTTAGAGGTGCAAATAATGGATCCATCAAAGGCCATGAAAACGCCAGTTGGAATTCTTCATGTGAAGGTTTTGAGAGCATTGAAGCTTAAAAAGAAAGATATAATGGGAGCAGCAGACCCTTATGTGAAACTTAAACTCAAAGATGATAAACTTGCTTCAAAGAAAACAACTGTGAAATACAAGAACTTGAATCCAGAATGGAATGAGGAATTTAATGTGGTCATTAAAGATCCAGAATCTCAAGCCTTAGTGCTTAATGTTTATGACTGGGAGCAGGTAATTAGTACATTCACATGCAAATTTAGAAGTTTTGGGTCAAATTCAAAATTTTGCAAGAGTTGA 732 0.3811 EFEELNLGSLPPTFQGMKVYSTDEKELIMELSMKWAGNPNIIVAVKAFGLRATVQVVDLQVFASPRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLLGADAMAIPGLYRIVQEIIKEQVAKMYLWPKALEVQIMDPSKAMKTPVGILHVKVLRALKLKKKDIMGAADPYVKLKLKDDKLASKKTTVKYKNLNPEWNEEFNVVIKDPESQALVLNVYDWEQVISTFTCKFRSFGSNSKFCKS 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8451g00001 243 CDD SMP_SYT 1 135 - -
Trme8451g00001 243 SMART C2_3c 148 243 IPR000008 -
Trme8451g00001 243 Pfam C2 domain 147 223 IPR000008 -
Trme8451g00001 243 PRINTS C2 domain signature 191 204 IPR000008 -
Trme8451g00001 243 PRINTS C2 domain signature 213 221 IPR000008 -
Trme8451g00001 243 PRINTS C2 domain signature 164 176 IPR000008 -
Trme8451g00001 243 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 1 136 IPR031468 GO:0008289
Trme8451g00001 243 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 143 227 IPR035892 -
Trme8451g00001 243 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 223 IPR045050 GO:0008289
Trme8451g00001 243 Gene3D C2 domain 129 233 IPR035892 -
Trme8451g00001 243 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 2 133 IPR039010 -
Trme8451g00001 243 CDD C2 149 225 - -
Trme8451g00001 243 ProSiteProfiles C2 domain profile. 127 243 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8451g00001 Trme-Chr8451 331 1780 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8451g00001 146 221 C2H2 Transcription Factor Family AT4G05330 41.558 6.50e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8451g00001 - - gmx:100778906 391.734