Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme84473g00001 ATGTCGCGGCAATTCCTATCATTTGCTTCAGTCTTGGAAAACAATCTTGAGGAGAAATCAAAGTTATACAAAGAAACTTCATTGCAGCACTTGTTCTTAATGAACAACCTACATTATATGGCTGAAAAGGTTAAAGGGTCTGAACTTAGGGTCATATTCGGAGACGAATGGATTCGAAAACGCAACTGGAAGTTTCAGCAGCACGCAATGAAATACGAGAGAGCTAGTTGGAGTTCAATTCTCAACTTACTTAAGGACGAAGGAATTCATGCTCCCGGTTCGAATTCTGTCTCGAAAACTCTTCTGAAGGAAAAGCTACGAAGCTTCTACCTCGGCTTCGAGGATATTTACAGGATTCAAACGGCTTGGTCGATTCCAGATGTTCAGCTTCGCGAAGATTTGCGGATTTCTATATCAGTTAAAGTGATTCAAGCTTATAGAACATTTGTTGGAAGGAATACTAGTCATATGAGTGACAAAAATATTAGATACACTGCTGATGATTTAGAAAATTATCTTTTGGATTTCTTTGAAGGTTCTCAAAAGTTGTTGCAAAATCCTCATAGGAGGTGA 573 0.3857 MSRQFLSFASVLENNLEEKSKLYKETSLQHLFLMNNLHYMAEKVKGSELRVIFGDEWIRKRNWKFQQHAMKYERASWSSILNLLKDEGIHAPGSNSVSKTLLKEKLRSFYLGFEDIYRIQTAWSIPDVQLREDLRISISVKVIQAYRTFVGRNTSHMSDKNIRYTADDLENYLLDFFEGSQKLLQNPHRR 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme84473g00001 190 SUPERFAMILY Cullin repeat-like 3 178 IPR016159 -
Trme84473g00001 190 Gene3D Exocyst complex component Exo70 1 185 - -
Trme84473g00001 190 Pfam Exo70 exocyst complex subunit 2 174 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trme84473g00001 190 PANTHER EXOCYST COMPLEX PROTEIN EXO70 2 179 IPR004140 GO:0000145|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme84473g00001 Trme-Chr84473 64 636 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme84473g00001 1 190 EXO70 exocyst subunit family AT5G50380 49.020 4.32e-62 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme84473g00001 K07195 - gmx:100799102 335.88