Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8439g00001 ATGGTGAATGCTACTTCAATTAAGGGTGGTGTAAGGTGTGTTTGTGAAGATGGATATGTTGGTGATGGTTTTGCTAATGGAACTGGATGCTTATTTTCATGTATCAAAGATGGAAAGGAAGCATATGGAAGTGACTGCTACATCAAAAGACATGATCAAAGAAAAATGGTCATCATTGCCGGAATCCTTTGTCCAATTCTTATTGTTGCCTCCTTAGTTGCACTATTCTATCTTCTAAAAAGAAAACAAAAGCCAGGAATGTTCGATTCCGAGCAAGCTTATTACCACAACATTTCATTCCGAAAAGCGTGTAGAACTCGACTTTTCAGCCACCATGAGCTAGAAGAAGCCACCAATGGTTTTGAAGATAGTAGAAAACTCATGCAATGCAACAACAGCACAATTTTTGCTGGTGTTATTGGTGATGGATCACATGTAGCTATACACAAGTTATCGAAATGCGAGAATGATAAAGATATGATGCAAGTTATGTCACAAATTGAAGTTCTATCTTCTATTGTACATAGGAATGTTGCATCAATCATTGGTTGTTGCATTGATTCTAACTACACTCCTTTAGTTGTTTATGAATATCCTGCAAATGGTACCTTGGAGGA 617 0.3728 MVNATSIKGGVRCVCEDGYVGDGFANGTGCLFSCIKDGKEAYGSDCYIKRHDQRKMVIIAGILCPILIVASLVALFYLLKRKQKPGMFDSEQAYYHNISFRKACRTRLFSHHELEEATNGFEDSRKLMQCNNSTIFAGVIGDGSHVAIHKLSKCENDKDMMQVMSQIEVLSSIVHRNVASIIGCCIDSNYTPLVVYEYPANGTLE 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8439g00001 205 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 12 204 IPR044652 GO:0004672
Trme8439g00001 205 FunFam probably inactive receptor-like protein kinase At2g46850 93 198 - -
Trme8439g00001 205 Gene3D Phosphorylase Kinase; domain 1 91 198 - -
Trme8439g00001 205 SUPERFAMILY Protein kinase-like (PK-like) 103 204 IPR011009 -
Trme8439g00001 205 Pfam Protein tyrosine and serine/threonine kinase 126 204 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8439g00001 Trme-Chr8439 70 1819 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8439g00001 13 204 Receptor kinase-like Gene Family AT1G16120 28.571 3.28e-20 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-3 Trme8439g00001 PK_Tyr_Ser-Thr 5.7e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8439g00001 - - gmx:100779880 319.701