LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme84251g00001	TCAAACCTTACACCAAAACCAATGGAAGGGTTACATGAAATAGGTCCACCTCCATTTCTCACCAAAACTTTTGATGTTGTTGAAGATCCATCCACTGATTCAATTGTTTCTTGGAGTGGTGCTCGTAATAGTTTTGTTGTTTGGGATCTTCACAAATTCTCCACCACCATTTTGCCTCGTTACTTCAAACACAGTAATTTCTCTAGCTTCGTTCGTCAACTCAATACTTATGTTTATTGTGTATACACTGATACCAGTGTCGACGTGTCTGGTGTTTGTGTATGTGTCTGTGTTGTGTCTGGTGTTTGTGTACGGTTTTAG	321	0.3956	SNLTPKPMEGLHEIGPPPFLTKTFDVVEDPSTDSIVSWSGARNSFVVWDLHKFSTTILPRYFKHSNFSSFVRQLNTYVYCVYTDTSVDVSGVCVCVCVVSGVCVRF	106

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme84251g00001	106	Gene3D	-	12	91	IPR036388	-
	Trme84251g00001	106	SMART	hsfneu3	15	93	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trme84251g00001	106	PRINTS	Heat shock factor (HSF) domain signature	57	69	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trme84251g00001	106	PRINTS	Heat shock factor (HSF) domain signature	70	82	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trme84251g00001	106	PRINTS	Heat shock factor (HSF) domain signature	19	42	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trme84251g00001	106	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	5	77	IPR027725	-
	Trme84251g00001	106	Pfam	HSF-type DNA-binding	19	79	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trme84251g00001	106	FunFam	Heat stress transcription factor B-4	11	86	-	-
	Trme84251g00001	106	SUPERFAMILY	"Winged helix" DNA-binding domain	17	84	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme84251g00001	Trme-Chr84251	109	704	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme84251g00001	5	77	HSF	AT2G26150	80.822	1.22e-44	145

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Trme84251g00001		HSF_DNA-bind	3.4e-22	CL0123