Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8402g00001 ATGGATTTGTCTAATTATATTATGATTCTACCATTGTACATCAACCTTTTGCCTCGCGGAGCTGTTATTTGGATTCTGATAGGTCGATCACATTTGCTTCGAGACCGAGAGTTAGTGTCTAGTGACAACTTTTTGGGCTGGGTTGGTGGTGTCTTCTTTGGGGGTCCAGAACATGAGGGGTGCCTTCCTGATTATGGAATTATGAGGAAGACCTCAATTTGGTGGGATTTTGTTCCTGATTATGGGACTAGGAGGAAAATCTCGATTAGGCATCACCAACAGGGTAGGTGGCAAGCGAGAATTGGCCGTGTTGCCGGAAACAAAGACCTGTACTTGGGAACATTTGCAACTGAAGAGGAAGCGGCAGAGGCGTACGACATTGCAGCAATAAAATTCCGAGGTGCAAATGCAGTCACAAACTTTGAGATGAACAGATATGATGTGGATGCCATAATGCAGAGTTCTCTTCCGGTTGGTAGTACAGCGAAGCGCGTGAAGCGATCACTTGGGTCTGAACAGAAAGCTTCTGTAACCAGCAATATTCAGCAGCAGAACAACGCGGAACAGTATGCAGCATGCATGATCAATAGCAACAAAAGCAGCAACATTAATTTCTCAACCATTCCGCATCAGCTGCCAGCTG 643 0.4557 MDLSNYIMILPLYINLLPRGAVIWILIGRSHLLRDRELVSSDNFLGWVGGVFFGGPEHEGCLPDYGIMRKTSIWWDFVPDYGTRRKISIRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVDAIMQSSLPVGSTAKRVKRSLGSEQKASVTSNIQQQNNAEQYAACMINSNKSSNINFSTIPHQLPA 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8402g00001 214 Gene3D AP2/ERF domain 87 144 IPR036955 GO:0003700|GO:0006355
Trme8402g00001 214 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 85 186 - -
Trme8402g00001 214 SUPERFAMILY DNA-binding domain 90 143 IPR016177 GO:0003677
Trme8402g00001 214 SMART rav1_2 89 148 IPR001471 GO:0003700|GO:0006355
Trme8402g00001 214 Pfam AP2 domain 90 134 IPR001471 GO:0003700|GO:0006355
Trme8402g00001 214 ProSiteProfiles AP2/ERF domain profile. 83 142 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8402g00001 Trme-Chr8402 1 1556 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8402g00001 89 166 AP2-EREBP Transcription Factor Family AT5G17430 81.013 7.15e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme8402g00001 AP2 2.3e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8402g00001 K09285 - sly:101248536 167.548