Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8400g00001 GTTTGCTCATATTATCAGAAAGGGTCTTGTGCTTATGGTAGTCGATGCAGATATAAGCATGTCAGAGCTTCTCAAGCATCATCTTCTGCGTCTATGGTTTCAGATTCTGCTAAAGTAGCATCAAATTGGGTTCCTAAGGTTACTAAGGCTCCTGCACCTGACAAGCGTGGCGTAAGGAGTTTACAACGCAAGCATCAGGACTCTAGTGATGTTGGTGAATCCAGTACTGCGAGTGCTAGGCCGCATGATATATTTTGTACATTTGCTGCGGCCAACTGCCCCTTAGGAGATGGATGTTCTCGTGTTCATGGAAATCAATGCTTGTACTGTAGAAAATATTGCTTGCATCCGACTGATAAAAAGGAAAAGGAGAGTCATTTGAGGACTTGTGACAAAAAGGAAAAGTACCTTCTGGCTTTGAAAAATAGTGAAGAAATAGAATGCAATGTTTGTCTGGAGCGTGTCCTTTCCAAACCCAAACCATCAGAATGTAAGTTTGGGTTGCTTCCAGAATGCGATCATGCTTTCTGCTTGTCATGTATCCGCAATTGGCGTAATAGTGCCCCAACCTCTGGAATTGAAATCAGTAGTAATTCCAATACTGTGAGAACCTGTCCTGTTTGCCGCAAACTATCGTATTTTGTCATTCCAAGTGGTATTTGGTTTACTACAAAGGAAGAAAAACAGGAAATTATTGATAACTACAAGGCAAACTGCAGGTAA 723 0.4163 VCSYYQKGSCAYGSRCRYKHVRASQASSSASMVSDSAKVASNWVPKVTKAPAPDKRGVRSLQRKHQDSSDVGESSTASARPHDIFCTFAAANCPLGDGCSRVHGNQCLYCRKYCLHPTDKKEKESHLRTCDKKEKYLLALKNSEEIECNVCLERVLSKPKPSECKFGLLPECDHAFCLSCIRNWRNSAPTSGIEISSNSNTVRTCPVCRKLSYFVIPSGIWFTTKEEKQEIIDNYKANCR 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8400g00001 240 MobiDBLite consensus disorder prediction 52 70 - -
Trme8400g00001 240 SMART ring_2 148 208 IPR001841 -
Trme8400g00001 240 ProSiteProfiles Zinc finger RING-type profile. 148 209 IPR001841 -
Trme8400g00001 240 Gene3D - 1 108 - -
Trme8400g00001 240 MobiDBLite consensus disorder prediction 44 77 - -
Trme8400g00001 240 PANTHER MAKORIN-RELATED 1 240 IPR045072 GO:0000209|GO:0061630
Trme8400g00001 240 ProSiteProfiles Zinc finger C3H1-type profile. 1 23 IPR000571 GO:0046872
Trme8400g00001 240 SUPERFAMILY RING/U-box 138 215 - -
Trme8400g00001 240 Pfam Zinc finger, C3HC4 type (RING finger) 148 208 IPR018957 GO:0046872
Trme8400g00001 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 223 IPR013083 -
Trme8400g00001 240 CDD RING-HC_MKRN 146 209 - -
Trme8400g00001 240 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
Trme8400g00001 240 Pfam CCCH-type zinc finger 1 20 IPR041367 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme8400g00001 zf-C3HC4 3.2e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8400g00001 K15687 - gmx:100788886 375.941