Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme83947g00001 ATGGCGGTGATGATACAAGTCAAGAACATCGCCGACATGGGTGCTTACGTTTCACTTCTTGAATACAACAACATCGAGGGTATGATTTTGTTCTCTGAACTCTCTCGTCGTCGTATTCGTAGTGTTAGCAGTCTAATCAAGGTGGGTCGAATTGAACCGGTTATGGTTCTTCGTGTTGATAAGGAAAAGGGTTACATCGATCTCAGTAAACGTAGGGTTTCTGAAGAAGATATTCAAGCTTGTGAAGAAAGGATCTTTATGTGCACATTGGATGGCCTTTGTATCGCAAATATGGTCATGCTTTTGAGGTAA 312 0.4167 MAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERIFMCTLDGLCIANMVMLLR 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme83947g00001 103 FunFam Eukaryotic translation initiation factor 2 subunit alpha 1 73 - -
Trme83947g00001 103 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 2 84 IPR011488 GO:0003723|GO:0003743
Trme83947g00001 103 Gene3D - 1 73 IPR012340 -
Trme83947g00001 103 CDD S1_IF2_alpha 3 72 IPR044126 GO:0003723
Trme83947g00001 103 SMART S1_6 1 71 IPR022967 -
Trme83947g00001 103 Pfam S1 RNA binding domain 7 71 IPR003029 GO:0003676
Trme83947g00001 103 SUPERFAMILY Nucleic acid-binding proteins 5 76 IPR012340 -
Trme83947g00001 103 ProSiteProfiles S1 domain profile. 1 71 IPR003029 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme83947g00001 1 84 Eukaryotic Initiation Factors Gene Family AT2G40290 98.810 1.16e-53 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme83947g00001 K03237 - pvy:116106237 156.762