Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme83815g00001 GATGTTGATTATGATTATTGTGATGCTGAGATTGTTGTTGAAGAAATTCCGGTTGGTATTCATCGATGTATACTCGCTTCGCGGAGTCAGTTTTTTCATGATCTTTTTAAGAAAGGGAAAGATGGAGATTTGAAGGAAGGAAAAGGAAAGCCAAGGTATCATATGAAAGATTTGGTGTCTTATGGTAGTGTTGGATATGAAGCTTTCATTGTTTTCTTGCATTATTTGTATACTGGAAAGTTAAAGGCTCCACCAACAGAAGTTACAACATGTGTTGATGAAGCATGTATTCACGATGCGTGTCGTCCGGCTATCAATTATGCTTTGGAACTTATGTATGCATCTGCCAATTTTAAGATGAAAGAGCTGGTTTTACTTTTTCAGGGAGGAAATGTGAAAAATTCGGAACAATAA 414 0.3647 DVDYDYCDAEIVVEEIPVGIHRCILASRSQFFHDLFKKGKDGDLKEGKGKPRYHMKDLVSYGSVGYEAFIVFLHYLYTGKLKAPPTEVTTCVDEACIHDACRPAINYALELMYASANFKMKELVLLFQGGNVKNSEQ 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme83815g00001 137 SMART BTB_4 7 135 IPR000210 GO:0005515
Trme83815g00001 137 Gene3D Potassium Channel Kv1.1; Chain A 3 130 IPR011333 -
Trme83815g00001 137 SUPERFAMILY POZ domain 5 126 IPR011333 -
Trme83815g00001 137 CDD BTB_POZ_NPR_plant 3 128 - -
Trme83815g00001 137 Pfam BTB/POZ domain 5 88 IPR000210 GO:0005515
Trme83815g00001 137 ProSiteProfiles BTB domain profile. 7 85 IPR000210 GO:0005515
Trme83815g00001 137 PANTHER REGULATORY PROTEIN NPR3 4 128 IPR044292 GO:0009862|GO:2000022|GO:2000031
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme83815g00001 Trme-Chr83815 2 490 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trme83815g00001 BTB 2.3e-12 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme83815g00001 K14508 - gmx:100816582 189.504