Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme83787g00001 GTAGACTGTGATGTGATTAAGATTGATATTCAATGTTTAGTGCAAGGAGATGTGGTTTTGGAGTGTGTACATTTGGATTTGGATCCGGAAAGGGAAGTGATGATGTTTCGTGTGATGTTCAATACAGCGTTTATTCGATCCAACATATTGATGCTGAACACCGAAAACTTGGACATTCTCTGGGATTCGAAGGAGCGGTATCCGAAAGGCTTTCGGGCTGAGGTTTTATTTGGGGAGGTTGAAAACATAAGTCCTCAGAGAGCTCCGACAGAGACAGCCATTTTGAATGGCGAGGAGAAAGGTGGATTACCCATTGAAGCATTTTCAAGAGTTCAAGAACTTTTTAGTGGAGTGG 355 0.4254 VDCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFNTAFIRSNILMLNTENLDILWDSKERYPKGFRAEVLFGEVENISPQRAPTETAILNGEEKGGLPIEAFSRVQELFSGV 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme83787g00001 118 SMART PTEN_C2_2 2 79 IPR014020 -
Trme83787g00001 118 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 80 IPR035892 -
Trme83787g00001 118 PANTHER FORMIN-J 2 118 - -
Trme83787g00001 118 Pfam C2 domain of PTEN tumour-suppressor protein 4 78 IPR014020 -
Trme83787g00001 118 ProSiteProfiles C2 tensin-type domain profile. 1 80 IPR014020 -
Trme83787g00001 118 Gene3D - 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme83787g00001 Trme-Chr83787 115 756 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme83787g00001 1 118 FH2 protein (formin) Gene Family AT1G31810 83.898 3.14e-65 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme83787g00001 - - adu:107487096 221.09