Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme83771g00001 GGTTGCTATGTCTGCATTGTTACTGGATACTGTGAAGGTGGAGACATGTCAGCAGCATTGATGAAAAAATCAAATGGGGTTTGCTTTCCTGAGGAGGAAATCTGCAAATGGGTTACTCAATTACTGTTGGCAGTAGAATACCTGCATTCAAATTTTGTTTTACAACGTGACCTAAGGTATTACATGGAATGGATGAAAAAAACTTTTGTCAAATTCTGCTGA 222 0.3829 GCYVCIVTGYCEGGDMSAALMKKSNGVCFPEEEICKWVTQLLLAVEYLHSNFVLQRDLRYYMEWMKKTFVKFC 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme83771g00001 73 Pfam Protein kinase domain 3 59 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme83771g00001 73 Gene3D Transferase(Phosphotransferase) domain 1 12 59 - -
Trme83771g00001 73 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 2 59 - -
Trme83771g00001 73 ProSiteProfiles Protein kinase domain profile. 1 73 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme83771g00001 73 SUPERFAMILY Protein kinase-like (PK-like) 3 59 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme83771g00001 Trme-Chr83771 270 696 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme83771g00001 5 59 AGC Kinase Gene Family AT3G52890 45.455 3.39e-10 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Trme83771g00001 Pkinase 1.6e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme83771g00001 K08857 - gmx:100780141 109.768