Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme83762g00001 GAGGATCTATTCGAGAAGGTTGTTACTCCGAGCGACGTTGGTAAACTAAACAGGCTAGTTATACCGAAACAGCATGCCGAGAAGCATTTTCCGTTACAAAAAGCCGTCGATTGCGGCGCTGAAGGAAGCGCCGCAGCAGCGGCAGGGAAGGGAGTGCTTTTAAATTTTGAAGACGTTGGAGGTAAAGTATGGCGGTTTAGATACTCTTATTGGAACAGTAGCCAAAGTTACGTTCTAACTAAAGGATGGAGCCGGTTCGTTAAAGAGAAGAATCTGAAAGCCGGTGATACGGTTTGTTTTCAACGGTCTACTACAGGACCGGATAAGCAGCTTTTTATTGATTGGAAAGCAAGAAAGAATGTTAATGAGGATGGATTGTTTGTTCCGGTTGGACCGGTTGTTGAACCGGTTCAGATGGTTCGGTTATTTGGGGTTAATATTTTGAAACTCCCTGGATCCGATGTTAATAATAATGGCAATGCTATTGCTGGATTATGCATTAATGGAAAAAGGAGGGAGATGGAAATGTTTACTTTGGATTCTTGCAAGAAGCCTAAGATTATTGGAGCTTTGTAA 576 0.4271 EDLFEKVVTPSDVGKLNRLVIPKQHAEKHFPLQKAVDCGAEGSAAAAAGKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFQRSTTGPDKQLFIDWKARKNVNEDGLFVPVGPVVEPVQMVRLFGVNILKLPGSDVNNNGNAIAGLCINGKRREMEMFTLDSCKKPKIIGAL 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme83762g00001 191 ProSiteProfiles B3 DNA-binding domain profile. 4 118 IPR003340 GO:0003677
Trme83762g00001 191 Gene3D - 1 126 IPR015300 -
Trme83762g00001 191 SUPERFAMILY DNA-binding pseudobarrel domain 3 106 IPR015300 -
Trme83762g00001 191 Pfam B3 DNA binding domain 4 115 IPR003340 GO:0003677
Trme83762g00001 191 CDD B3_DNA 3 106 IPR003340 GO:0003677
Trme83762g00001 191 SMART B3_2 4 119 IPR003340 GO:0003677
Trme83762g00001 191 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 3 157 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme83762g00001 Trme-Chr83762 1 576 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme83762g00001 1 191 B3 DNA Binding Superfamily AT1G25560 58.549 3.28e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme83762g00001 B3 3.3e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme83762g00001 K09287 - gmx:100801107 290.041