Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme83486g00001 ATGGACAAGAGCAGTGTCCATGATATTGTTCTTGTTGGTGGCTCTACGAGGATCCCAAAAGTGCAGCAGTTGTTGCAGGATCTCTTCAATGGGAAGGAGCTCTGCAAGAGCATCAACCCAGATGAGGCTGTTGCTTATGGAGCTGCTCTTCAGGCTGCTATCTTGAACCATGAGGAGAACAAGAAGGTTAAGGATCTTGCGTTGGTGGATGTCACTTCCCTTTCACTTGGTGTGGAAACTGTTGGTGGTGTCATGACTGTCCTGATTCCAAAGAACTGTGTAATCCCGTACAAGGAGAAGCGGGTTTTCTCAACCTACTCCGACAACCAGCCTAGTGTGTTGATCAGGGTGTACGAGGGTGAGAGAACCAGGAGCAGGGACAACAACTTGCTAGGTAAATTCGAGCTTTCTGGCATCCTTCCTGCTCCAAGGGGTGTTCCTCAGATCAATGAGGCGGAGAAGTACAAGGCTGAGGATGAGGAGCACAAGAAGAACGTAGAGGCCAAGATTGCCTTGGAACAAAAGGTGGAGAGGTACTGTTTTACAAAAGATGCTCCAGATCAACACTTGGAGGCACAAGTAGAACATGATACTTGCCAT 600 0.4833 MDKSSVHDIVLVGGSTRIPKVQQLLQDLFNGKELCKSINPDEAVAYGAALQAAILNHEENKKVKDLALVDVTSLSLGVETVGGVMTVLIPKNCVIPYKEKRVFSTYSDNQPSVLIRVYEGERTRSRDNNLLGKFELSGILPAPRGVPQINEAEKYKAEDEEHKKNVEAKIALEQKVERYCFTKDAPDQHLEAQVEHDTCH 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme83486g00001 200 ProSitePatterns Heat shock hsp70 proteins family signature 3. 9 23 IPR018181 -
Trme83486g00001 200 Coils Coil 149 169 - -
Trme83486g00001 200 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 62 173 IPR029047 -
Trme83486g00001 200 Gene3D - 150 196 IPR029048 -
Trme83486g00001 200 PRINTS 70kDa heat shock protein signature 6 22 - -
Trme83486g00001 200 PRINTS 70kDa heat shock protein signature 38 58 - -
Trme83486g00001 200 PRINTS 70kDa heat shock protein signature 65 84 - -
Trme83486g00001 200 Pfam Hsp70 protein 2 150 IPR013126 GO:0005524|GO:0140662
Trme83486g00001 200 Gene3D - 1 38 - -
Trme83486g00001 200 Gene3D - 39 53 - -
Trme83486g00001 200 SUPERFAMILY Actin-like ATPase domain 2 55 IPR043129 -
Trme83486g00001 200 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 54 149 IPR029047 -
Trme83486g00001 200 PANTHER HEAT SHOCK PROTEIN 70KDA 1 184 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme83486g00001 Trme-Chr83486 23 757 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme83486g00001 1 173 Calmodulin-binding Proteins AT3G12580 65.138 1.20e-89 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme83486g00001 K03283 - atri:130802424 270.396