Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme83378g00001 ATGAAAATTGCAGCAGGAGCAGCAAAAGGGCTTGAATATTTACACGAACAAGCAAACCCTCCGGTGATATATCGCGATTTCAAAGCATCAAATATACTATTAGATGAAAACTACAATCCAAAGCTTTCTGACTTTGGACTTGCAAAGCTCGGTCCGACCGGTGATAAAACACATGTATCGACAAGAGTGATGGGAACTTACGGCTATTGTGCTCCAGAGTATGCATCAACAGGGCAATTAACTACAAAATCAGATGTGTATAGTTTTGGAGTCGTGTTTTTGGAGATTATCACAGGAAGAAGAGTCATTGACAATTCAAG 320 0.4 MKIAAGAAKGLEYLHEQANPPVIYRDFKASNILLDENYNPKLSDFGLAKLGPTGDKTHVSTRVMGTYGYCAPEYASTGQLTTKSDVYSFGVVFLEIITGRRVIDNS 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme83378g00001 106 Gene3D Transferase(Phosphotransferase) domain 1 1 106 - -
Trme83378g00001 106 ProSitePatterns Serine/Threonine protein kinases active-site signature. 22 34 IPR008271 GO:0004672|GO:0006468
Trme83378g00001 106 PANTHER OS07G0668900 PROTEIN 1 106 - -
Trme83378g00001 106 ProSiteProfiles Protein kinase domain profile. 1 106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme83378g00001 106 Pfam Protein kinase domain 3 104 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme83378g00001 106 SUPERFAMILY Protein kinase-like (PK-like) 2 104 IPR011009 -
Trme83378g00001 106 FunFam Os07g0541700 protein 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme83378g00001 Trme-Chr83378 1 320 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme83378g00001 1 106 Glycoside Hydrolase AT3G07070 80.189 2.16e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Trme83378g00001 Pkinase 3.8e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme83378g00001 - - fve:101293966 211.075