Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme83268g00001 ATGACCAGGAGGAAGGTTAAACTTGCCTTTATCTCCAATGATTCAGCAAGGAAGGCAACCTACAAGAAAAGAAAGAGGGGTATCATCAAGAAGGTGAGAGAACTCACCATTCTTTGTGATGTTCCGGCATGTGTTATAATTTCGAATCCTTTTAATTCTGAAACAGTGGCGTGGCCGGATCCAGAGGGAGCCAAGCAG 198 0.4444 MTRRKVKLAFISNDSARKATYKKRKRGIIKKVRELTILCDVPACVIISNPFNSETVAWPDPEGAKQ 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme83268g00001 66 Gene3D - 13 63 IPR036879 GO:0003677|GO:0046983
Trme83268g00001 66 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Trme83268g00001 66 SUPERFAMILY SRF-like 1 60 IPR036879 GO:0003677|GO:0046983
Trme83268g00001 66 PANTHER MADS BOX PROTEIN 3 53 - -
Trme83268g00001 66 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trme83268g00001 66 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trme83268g00001 66 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trme83268g00001 66 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme83268g00001 Trme-Chr83268 23 220 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme83268g00001 1 59 Type I MADS-box Gene Family AT3G05860 52.542 5.58e-21 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trme83268g00001 SRF-TF 3.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme83268g00001 - - var:108325536 101.293