Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8300g00001 ATGTCGAAGAGAGCTCGTGGTGGTTCTATTGGAAACAAGTTTCTTATGTCACTGGGAATCAAGGGTAGACTTAACTATCTTCCTTCAACTTGCGTTGGTGACATGGTGATGGCCACTGTCAAAAAGGGAAAACTTGATCTTAGAAAAAAGGATTTACCTGCTATTATTGTTCGTCAGTGCAAACCATGGCGTCGAAAGAATGGTCTTTTCATGTACTTTGAAGATAATGTTGGTGTTATTGTGAATCGTAAGGGTGAAATGAAAGGGTCTGCATTGGACCAGTTGATAAGTAGTGTGACGATCTTTGGCCAAGGTTGCAAGTGTTGCCAATGTCTTTGT 339 0.41 MSKRARGGSIGNKFLMSLGIKGRLNYLPSTCVGDMVMATVKKGKLDLRKKDLPAIIVRQCKPWRRKNGLFMYFEDNVGVIVNRKGEMKGSALDQLISSVTIFGQGCKCCQCLC 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8300g00001 113 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 11 96 IPR000218 GO:0003735|GO:0005840|GO:0006412
Trme8300g00001 113 SUPERFAMILY Ribosomal protein L14 17 96 IPR036853 GO:0003735|GO:0005840|GO:0006412
Trme8300g00001 113 ProSitePatterns Ribosomal protein L14 signature. 54 80 IPR019972 -
Trme8300g00001 113 SMART Ribosomal_L14_2 9 100 IPR000218 GO:0003735|GO:0005840|GO:0006412
Trme8300g00001 113 Pfam Ribosomal protein L14p/L23e 28 96 IPR000218 GO:0003735|GO:0005840|GO:0006412
Trme8300g00001 113 Gene3D Ribosomal protein L14 3 99 IPR036853 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8300g00001 Trme-Chr8300 973 1386 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8300g00001 1 96 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 64.463 9.36e-46 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8300g00001 K02894 - jre:108981199 139.428