Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme83009g00001 TTTGCTAGTACAGGAGAGAAAGAATGGTATTTCTACTGTCCAAGAGACAGAAAATACAGAAACAGTGCAAGGCCTAATAGGGTAACTGGAGCTGGATTCTGGAAAGCTACAGGGACAGATAGACCTATCTATTCTTCAGAAGGTTCAAAGTGCATTGGCCTTAAGAAATCATTAGTCTTTTACAAAGGAAGAGCTGCTAAAGGAATCAAAACTGATTGGATGATGCATGAGTTTAGGCTACCTTCTCTCACTGATCCACTTTCACCTAAGAAGTACTTGGAGAAAACCATTCCGGCTAATTTACTGCATGATGCAGTAATGCATCTGAACCGTTCGATCACGATCTGA 348 0.408 FASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRLPSLTDPLSPKKYLEKTIPANLLHDAVMHLNRSITI 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme83009g00001 115 SUPERFAMILY NAC domain 4 83 IPR036093 GO:0003677|GO:0006355
Trme83009g00001 115 ProSiteProfiles NAC domain profile. 1 95 IPR003441 GO:0003677|GO:0006355
Trme83009g00001 115 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 82 - -
Trme83009g00001 115 Gene3D NAC domain 1 105 IPR036093 GO:0003677|GO:0006355
Trme83009g00001 115 Pfam No apical meristem (NAM) protein 4 80 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme83009g00001 Trme-Chr83009 186 613 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme83009g00001 1 79 NAC Transcription Factor Family AT1G26870 94.937 5.53e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme83009g00001 NAM 9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme83009g00001 - - lja:Lj2g3v1278970.1 207.608