Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8295g00001 GGTCATAAAGAATGGCTTGCAGAAGTTCAATTTCTCAGCATTGTTAATCACCCAAATTTGGTTAAGCTTTTGGGATACTGCTCTGTAGACGGAGAAAGAGGAATCCAACGGCTATTGGTGTATGAGTTCATGCCAAACAGGAGCTTGGAAAATCACCTTTTCAGTAAAACTTTACCAACCCTTCCATGGAAAACAAGATTGGAGATCATGCTTGGTGCTGCTGAAGGATTAGCTTATCTACATGAGGGATTGGAGATACAGGTGATCTACCGAGATTTCAAGTCTTCAAATGTTTTACTAGATGAGGATTTCCACCCGAAGCTCTCGGATTTTGGTCTTGCNNNNNNNNNNANNNNNNNNGATCAGACTCATGTATCTACTGCGGTAGGTTTATAA 396 0.3939 GHKEWLAEVQFLSIVNHPNLVKLLGYCSVDGERGIQRLLVYEFMPNRSLENHLFSKTLPTLPWKTRLEIMLGAAEGLAYLHEGLEIQVIYRDFKSSNVLLDEDFHPKLSDFGLAXXXXXXDQTHVSTAVGL 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8295g00001 131 ProSitePatterns Serine/Threonine protein kinases active-site signature. 88 100 IPR008271 GO:0004672|GO:0006468
Trme8295g00001 131 ProSiteProfiles Protein kinase domain profile. 1 131 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme8295g00001 131 Pfam Protein tyrosine and serine/threonine kinase 3 125 IPR001245 GO:0004672|GO:0006468
Trme8295g00001 131 Gene3D Transferase(Phosphotransferase) domain 1 1 130 - -
Trme8295g00001 131 SMART tyrkin_6 2 131 IPR020635 GO:0004713|GO:0006468
Trme8295g00001 131 PANTHER OS01G0588500 PROTEIN-RELATED 1 129 - -
Trme8295g00001 131 FunFam Os07g0541700 protein 44 130 - -
Trme8295g00001 131 SUPERFAMILY Protein kinase-like (PK-like) 2 124 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8295g00001 Trme-Chr8295 1014 1674 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8295g00001 1 129 Trihelix Transcription Factor Family AT1G70460 49.612 1.02e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trme8295g00001 PK_Tyr_Ser-Thr 8.2e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8295g00001 - - gmx:100305403 239.58