Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme82941g00001 AGCATATCAAAGCGGGGTTTTGAAAGCAAGCATTGGCTCTATCGTTCAAAGTCACATGTTGCTCCGGATGTAAGTCCAATTGAACCTATTCAACAGGGACAGTGGGCAAGTCTACCACCTGAATTACTTTTGGATATAATCAGGAGGGTTGAAGAGAGTGAGACATCTTGGCCTGCCCGTGCTGTTGTTGTTTTTTGTGCTTCGGTATGTAAATCATGGAGGTCCGTCACAAAAGAGATCATCAAGACACCTCAGCAATGTGGAAGGATCACATTTCCTATTTCATTGAAGCAGCCTGGTCCCCGTGATTATCCGATACAGTGCTTTATTAGGAGGAACCGAGAAACTTCTACATTCGTGTTGTACTTAGGTTTGGTGCCATGTAAGTATTTCATTGCTGAAACATTTCATCCCCTTTTCTAA 423 0.4303 SISKRGFESKHWLYRSKSHVAPDVSPIEPIQQGQWASLPPELLLDIIRRVEESETSWPARAVVVFCASVCKSWRSVTKEIIKTPQQCGRITFPISLKQPGPRDYPIQCFIRRNRETSTFVLYLGLVPCKYFIAETFHPLF 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme82941g00001 140 Pfam F-box domain 35 80 IPR001810 GO:0005515
Trme82941g00001 140 Gene3D - 28 84 - -
Trme82941g00001 140 Pfam Tub family 96 126 IPR000007 -
Trme82941g00001 140 SUPERFAMILY F-box domain 29 79 IPR036047 GO:0005515
Trme82941g00001 140 PANTHER TUBBY-RELATED 31 126 - -
Trme82941g00001 140 SUPERFAMILY Tubby C-terminal domain-like 84 127 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme82941g00001 Trme-Chr82941 80 596 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme82941g00001 6 129 TUB Transcription Factor Family AT2G18280 64.286 1.04e-53 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme82941g00001 K19600 - lja:Lj0g3v0148859.1 230.72