Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme82908g00001 ATGAACTGCATAATTAGTTTATTTTTATCATGTCAGATACGATACAGATCCGATGGACCACTTGTACTTCATGGAATCACATGCACATTTAAAGCAGGGCATAAGATTGGTATTGTTGGAAGAACAGGCAGTGGTAAATCTACTCTTATTAGCGCTTTATTTCGTCTTGTGGAACCAGCAGGAGGAAAAATTGTAGTTGATGGAATAGACATCTCATCTATCGGCCTTCATGATTTGAGGTCACGTTTTGGGGTTATACCTCAGGATCCTACCCTCTTTGACGGGCCAGTAAGATATAATTTGGACCCTTTATCGCAACACACTGATCAAGAGATATGGGAG 342 0.4035 MNCIISLFLSCQIRYRSDGPLVLHGITCTFKAGHKIGIVGRTGSGKSTLISALFRLVEPAGGKIVVDGIDISSIGLHDLRSRFGVIPQDPTLFDGPVRYNLDPLSQHTDQEIWE 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme82908g00001 114 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 8 114 - -
Trme82908g00001 114 Pfam ABC transporter 23 107 IPR003439 GO:0005524
Trme82908g00001 114 Gene3D - 8 114 IPR027417 -
Trme82908g00001 114 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 113 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme82908g00001 Trme-Chr82908 324 665 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme82908g00001 22 101 Calmodulin-binding Proteins AT2G36910 35.000 1.99e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme82908g00001 K05666 - gmx:100786761 200.29