Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme82863g00001 ATGGCCGGCATAGACTTGGGTTCAGCATCACAACACTTTGTTCATCGTCTCCAACGCCCTGACCTTGAAGTTCATGATGAGAGTCAAGACCAAGATGGAAACAACAACAACCATGAAGGGCTTGACCTAGTTTCACCAAATCATGGTCTTGGTGATGTTGTTGGTCGTAGACCCAGGGGAAGACCTCCAGGCTCAAAGAACAAACCTAAACCACCAGTGATAATCACAAGAGAGAGTGCAAACACACTTAGGGCTCACATCCTTGAGGTTAGTAGCGGTTGCGATGTGTTTGACTCTGTGGCTACCTATGCAAGAAAGCGTCAAAGAGGGATCTGTGTCCTCAGTGGTAGTGGAACTGTCACTAACGTGACCCTGCGNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNATATTATCTTTGTCTGGATCGTTTCTACCTCCCCCGGCTCCACCAGGTGCTACAAGTTTGAGTGTGTTCCTTGGTGGAGGTCAAGGTCAAGTTGTGGGAGGAAATGTTGTTGGTCCTTTGGTTGCTTCTGGGCCCGTTATTGTTATTGCTTCATCTTTCACTAACGTAGCGTATGAGAGGTTACCGTTAGATGAAGATGAATCTCTTCAGATGCAACAAGGGCAATCATCTGCAGGCGGTGGTGGTGGTGATGGTGTTAATAACTCTTTTCCCGATCCTTCTTCGGGGCTTCCATTCTTCAATTT 731 0.4419 MAGIDLGSASQHFVHRLQRPDLEVHDESQDQDGNNNNHEGLDLVSPNHGLGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVSSGCDVFDSVATYARKRQRGICVLSGSGTVTNVTLRXXXXXXXXXXXXXXXXILSLSGSFLPPPAPPGATSLSVFLGGGQGQVVGGNVVGPLVASGPVIVIASSFTNVAYERLPLDEDESLQMQQGQSSAGGGGGDGVNNSFPDPSSGLPFFN 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme82863g00001 243 MobiDBLite consensus disorder prediction 16 33 - -
Trme82863g00001 243 MobiDBLite consensus disorder prediction 206 243 - -
Trme82863g00001 243 SUPERFAMILY AF0104/ALDC/Ptd012-like 80 211 - -
Trme82863g00001 243 Gene3D - 83 218 - -
Trme82863g00001 243 ProSiteProfiles PPC domain profile profile. 80 217 IPR005175 -
Trme82863g00001 243 CDD DUF296 84 166 IPR005175 -
Trme82863g00001 243 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 29 218 IPR014476 GO:0003680
Trme82863g00001 243 Pfam Plants and Prokaryotes Conserved (PCC) domain 84 197 IPR005175 -
Trme82863g00001 243 MobiDBLite consensus disorder prediction 1 73 - -
Trme82863g00001 243 PIRSF ESCAROLA 4 238 IPR014476 GO:0003680
Trme82863g00001 243 MobiDBLite consensus disorder prediction 210 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme82863g00001 Trme-Chr82863 30 760 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme82863g00001 1 243 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 59.498 4.85e-79 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme82863g00001 - - gmx:100814613 330.102