Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme82830g00001 ATGTTCTCGTTTAATTTGATAACCAGAAAGGAGAAAGACGACTTAATTCACTCAGATTCTCCCGTAAATCCTGGAAAGAAACCCAAGTATGTTGTACATGCAGCAGGAGATGTGGGGATATCAGGTGATGGATACCGATGGCGCAAGTATGGACAGAAAATGGTGAAGGGTAATCCACATCCCAGTGCATTGATAAATCAGTATCGTTAG 210 0.419 MFSFNLITRKEKDDLIHSDSPVNPGKKPKYVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPSALINQYR 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme82830g00001 69 Pfam WRKY DNA -binding domain 43 62 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme82830g00001 69 Gene3D WRKY domain 29 69 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme82830g00001 69 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 18 61 IPR044810 GO:0003700
Trme82830g00001 69 SUPERFAMILY WRKY DNA-binding domain 36 62 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme82830g00001 69 ProSiteProfiles WRKY domain profile. 36 69 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme82830g00001 69 SMART WRKY_cls 41 69 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme82830g00001 Trme-Chr82830 199 498 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme82830g00001 9 69 WRKY Transcription Factor Family AT4G30935 72.131 1.92e-23 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trme82830g00001 WRKY 2e-07 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme82830g00001 - - mtr:11440414 108.612