Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme82805g00001 GTGGAGAGAGTGGAGAGAGTGGAGAAAGCAAGATATGTGAGGATATCAGGTGATGGATACCGATGGCGCAAGGTTGGAGAGAAAATTGTGAAGGGTAACCCACACCCCAGACATTACTATAGATGCACTTCTTCTGCTAGATGTCTTGCTCGGAAGCACATTCAGACTGTCGTAGACAACTCAGATGTTATCGTTACTTACTACAAGGAAGCACATTCTAGATGCACTTCTAGGTAG 237 0.4515 VERVERVEKARYVRISGDGYRWRKVGEKIVKGNPHPRHYYRCTSSARCLARKHIQTVVDNSDVIVTYYKEAHSRCTSR 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme82805g00001 78 ProSiteProfiles WRKY domain profile. 11 77 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme82805g00001 78 SUPERFAMILY WRKY DNA-binding domain 13 73 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme82805g00001 78 Gene3D WRKY domain 2 76 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme82805g00001 78 SMART WRKY_cls 16 77 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme82805g00001 78 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 11 73 IPR044810 GO:0003700
Trme82805g00001 78 Pfam WRKY DNA -binding domain 18 73 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme82805g00001 Trme-Chr82805 160 579 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme82805g00001 7 73 WRKY Transcription Factor Family AT4G30935 59.701 4.41e-22 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trme82805g00001 WRKY 8.8e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme82805g00001 - - gmx:100782194 94.7449