Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme82789g00001 ATGTTGCAGCTGTGGAGCAATGTTCGTGTTGCTTTTGGGGATCAACCTGATTTAGTTGAACTGTCAGAAAAATTATCCCAGAATTTTGAATTTTTATACAATAAGGAGGTTGTCACTTATGTTGAAAAGTTCACTGATTATGCTAAAGCAGGATGCATCAGTGATCAAATGAAAAAAGATATCAACGATTTCATTGCATCAACAAGTCAGATTCCAAAGGCCCCTTGGGATGAGGGGGTTTGCAAAGTATGCGGAATTGACAGGGATGATGACAGTGTTTTACTGTGTGACAAATGTGATGCTGAGTATCATAAATATTGCTTGAATCCTCCACTTGCAAGGATCCCTGAAGGAAACTGGTACTGTCCATCTTGTAATGGTGGTAAACATGCAACTCAAGATGTCACAGAACGTGCACAGATTACTGGAAAACGTAGTAGTAAAAAATTCCAGGGAGAAATTAATTGTCTTTACTTGGAAGCGCTAACTCATTTATCGGCTGTAATTGAAGAAAAAGAATATTGGGAGTACAGCGTGGGAGAG 543 0.3904 MLQLWSNVRVAFGDQPDLVELSEKLSQNFEFLYNKEVVTYVEKFTDYAKAGCISDQMKKDINDFIASTSQIPKAPWDEGVCKVCGIDRDDDSVLLCDKCDAEYHKYCLNPPLARIPEGNWYCPSCNGGKHATQDVTERAQITGKRSSKKFQGEINCLYLEALTHLSAVIEEKEYWEYSVGE 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme82789g00001 181 ProSiteProfiles Zinc finger PHD-type profile. 78 128 IPR019787 -
Trme82789g00001 181 SMART PHD_3 80 126 IPR001965 -
Trme82789g00001 181 ProSitePatterns Zinc finger PHD-type signature. 81 125 IPR019786 -
Trme82789g00001 181 PANTHER OS02G0192300 PROTEIN 2 181 - -
Trme82789g00001 181 SUPERFAMILY FYVE/PHD zinc finger 68 129 IPR011011 -
Trme82789g00001 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 141 IPR013083 -
Trme82789g00001 181 Pfam PHD-finger 80 126 IPR019787 -
Trme82789g00001 181 CDD PHD1_Lid2p_like 80 125 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme82789g00001 1 181 C2H2 Transcription Factor Family AT3G01460 55.801 5.62e-71 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trme82789g00001 PHD 6.7e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme82789g00001 K22768 - gmx:100820223 318.161