Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme827480g00001 | AATTTGGATAAGACAATTGACCACAAAGCTTTACATGATACCTTTTCTACTTTCGGACATATTCTGTCTTGCAAGATAGCGACTGATGGCTCTGGTCAGTCTAAAGGCTATGGTTTTGTCCAATTTGAGACTGCGGAATCTGCTCAGAGTGCTATTGATCAGTTAAATGGCATGCTGATC | 180 | 0.4056 | NLDKTIDHKALHDTFSTFGHILSCKIATDGSGQSKGYGFVQFETAESAQSAIDQLNGMLI | 60 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme827480g00001 | 60 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 1 | 60 | IPR000504 | GO:0003723 | |
| Trme827480g00001 | 60 | SUPERFAMILY | RNA-binding domain, RBD | 1 | 60 | IPR035979 | GO:0003676 | |
| Trme827480g00001 | 60 | Gene3D | - | 1 | 60 | IPR012677 | - | |
| Trme827480g00001 | 60 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1 | 59 | IPR000504 | GO:0003723 | |
| Trme827480g00001 | 60 | PANTHER | RNA BINDING PROTEIN | 1 | 57 | - | - | |
| Trme827480g00001 | 60 | SMART | rrm1_1 | 1 | 60 | IPR000504 | GO:0003723 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme827480g00001 | 1 | 60 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 76.667 | 2.35e-28 | 103 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme827480g00001 | K13126 | - | pvy:116125579 | 110.153 |