Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme82633g00001 ATGTTGACCAAGTGGTGTCCTGCTCCTGGTTGTGAGCATGCTGTTAATTTTGATGCTGGAACTGAAAATTATGATGTATCTTGCCTCTGTTCATATAGCTTTTGTTGGAATTGCACTGAAGAGGCTCACCGTCCAGTGGATTGTGACACTGTGTCAAAGTGGATTCTAAAAAACAGTGCAGAATCCGAAAACATGAACTG 200 0.42 MLTKWCPAPGCEHAVNFDAGTENYDVSCLCSYSFCWNCTEEAHRPVDCDTVSKWILKNSAESENMN 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme82633g00001 66 Pfam IBR domain, a half RING-finger domain 3 48 IPR002867 GO:0008270
Trme82633g00001 66 SUPERFAMILY RING/U-box 3 55 - -
Trme82633g00001 66 Gene3D - 5 53 - -
Trme82633g00001 66 ProSiteProfiles TRIAD supradomain profile. 1 66 IPR044066 -
Trme82633g00001 66 SMART ibrneu5 2 48 IPR002867 GO:0008270
Trme82633g00001 66 CDD BRcat_RBR_ANKIB1 4 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme82633g00001 Trme-Chr82633 194 736 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme82633g00001 4 66 ARIADNE family AT1G05890 88.889 7.61e-37 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme82633g00001 K11968 - gmx:100793295 138.658