Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme82619g00001 ATGGCTCCGGAAGTTTTCAAACATCGGAGGTATGAGAAGAAGGTTGACGTGTACTCCTTTGCAATGATTTTGTATGAGATGCTTGAAGGTGAACCACCTTTTGCAAGTTATGAACCTTATGATGGAGCAAAACACGCAGCTGAAGGGCACAGGCCKGCTTTTCGAGCAAAGGGTTATATCCCTGAATTGCAAGAGTAA 198 0.4394 MAPEVFKHRRYEKKVDVYSFAMILYEMLEGEPPFASYEPYDGAKHAAEGHRPAFRAKGYIPELQE 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme82619g00001 65 SUPERFAMILY Protein kinase-like (PK-like) 1 54 IPR011009 -
Trme82619g00001 65 PANTHER SERINE-THREONINE PROTEIN KINASE 1 52 - -
Trme82619g00001 65 Gene3D Transferase(Phosphotransferase) domain 1 1 65 - -
Trme82619g00001 65 Pfam Protein kinase domain 1 42 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme82619g00001 65 ProSiteProfiles Protein kinase domain profile. 1 65 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme82619g00001 Trme-Chr82619 29 314 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme82619g00001 1 65 MAP Kinase Kinase Kinase AT1G14000 76.923 4.29e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Trme82619g00001 Pkinase 9.4e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme82619g00001 - - adu:107481197 129.413