Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8258g00001 ATGGAAACGGAAGAAGGAACTCGTGCGAAAGAAGAAACCCTACCTCCTGGATTTCGATTTCATCCAACCGACGAAGAACTCATTACTTACTATCTTGTAAACAAGATTTCAGATGCTGATCATTTTACTTGCAAAGCAATAGGTGATGTAGATCTCAACAAGTGCGAGCCATGGGAGCTTCCTGAGTAG 189 0.4233 METEEGTRAKEETLPPGFRFHPTDEELITYYLVNKISDADHFTCKAIGDVDLNKCEPWELPE 62
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8258g00001 62 Gene3D NAC domain 23 62 IPR036093 GO:0003677|GO:0006355
Trme8258g00001 62 SUPERFAMILY NAC domain 9 62 IPR036093 GO:0003677|GO:0006355
Trme8258g00001 62 ProSiteProfiles NAC domain profile. 14 62 IPR003441 GO:0003677|GO:0006355
Trme8258g00001 62 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 62 - -
Trme8258g00001 62 Pfam No apical meristem (NAM) protein 15 61 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8258g00001 Trme-Chr8258 930 1216 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8258g00001 8 62 NAC Transcription Factor Family AT2G24430 78.182 2.88e-25 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme8258g00001 NAM 1.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8258g00001 - - pop:18107554 105.145