Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme823g00001 ATGGTGTACATGGAGAAGCGTTTGGTTGATTCTGCGATCGATGAAATTGCTGATGTGGTTCCTGGTAAAGAAAATGCTCGTATTAGGGCTAGGGTTATTCGGTTGTGGAAGGTTCCTGCTTTCCTAAACCCAAGTGAATCTAGCTCTATTGAGATGGTTCTTATCGATGATAAGGGAGGAAAAATCCATGCTACCATTAGGAAGCAGTTGATTCATGTGTTTGATTCCCAGCTTGAGGAGGGACAGGTGTATGAGATGTCCAATTTCTCTGTTTTTCCTCAAAGTGGTAATTATCGTACGACTCTGCACCCATACAAGATTGTGTTCCAGCTGAGGACAAAGGTTGCAGTTGCTGAAGGTTCGAATATAACTCAATTAGGAATAGGTGTTACCAGTCTTGCAGAGATTGGTGCTTATACTCATGATTATGAGTTCTTGGTTGATGTGATTGGTTTGATGACTGGTATTTCTACTGAAAGAGAGTATGTTCGTGATGGTAAATTAACTAAAATGGTTGTTATTGAGTTAACTGATCATAGTGGCAAATGTGAATGTGCTCTGTTTGGAGAATATGTTGATGAGTTAAACAAGAAAATGGGGAAATCTTCTACTGGTGGTTTGCCTATTGTGGTTGTTCAGTTTGCAAAGGTGAAAATCTTTAGAGACAAAGCATCTCTTCAGAATGTGCTTAACACTACTAGGATATTGATAAATCCAGATATTCCTGAAGCTGAGGCATTTAAAAATAGCATTGCAGTGCATGGTATAGAGAATGATGCCGCTGTTCCAATGATTGGTGAATGGCCTAAGCCGTCTGTTGAGGATGAATTTCTTCGTATGCATCCCAAAAAAAGTGTGGGAGAGCTCAATAATCTGTGTGATGCTGGGGTGTTTGTTGTGTGTGCTCAGGTTGTGCGTGTGGTTGATGGACAGGATTGGTGGTATCCTGCTTGCAAGTGTCACAAGGCCGTTGTGCCTGAGTCAGGATCTTATTTCTGCAGTGCATGTGATCGATGTGTATTTCAAGTTATACCAAGGTTTAGGGTGAAGATTGAAGTTACTGATGGTAAAGACAGCTGTGTTTTTGTTTTGTTTGATTCTGATGTGAGTTACATGATGGAAAAATCTTGTGCTTTTTTTGTTGCTCGGGCAAAGGCTAAAATTGTTGGACCGCATCCAATTGAGTTTGATAGCTTAGTCGGAAAGAAGATGTTGTTTGCTGTTGATAAAAGTGTTAAACAGTCGTCTGTGGGTGATGGCTCGTGTAGGGTAAGGAGAGTTTGCATGAATCCTACTATTATTGAAGAGTTTTGTGGTGAGGGTGGATTTCGTACTCCGTCAAAGGGAAGGTCTCCTTCTATTGACATGGACTCTGATGGTTTGAGTGATGATGTTGACGCTGGTGAGGACACGCCGTCAGTTGAGTTTGTTAAGGATCTTATTGTTACTCCGCCAGCTGCCAGTGAAGTGGAAGATGTTGATAGTGATGGTCCTTTTATAGTGAAGAGGAATCTATCAAAGGCTTTTGATGCAGCTGCTAGGCCAAAGCGCAACACTCGTCTCAAAAAAGTTAAGATTGAGATGGACTGA 1590 0.4138 MVYMEKRLVDSAIDEIADVVPGKENARIRARVIRLWKVPAFLNPSESSSIEMVLIDDKGGKIHATIRKQLIHVFDSQLEEGQVYEMSNFSVFPQSGNYRTTLHPYKIVFQLRTKVAVAEGSNITQLGIGVTSLAEIGAYTHDYEFLVDVIGLMTGISTEREYVRDGKLTKMVVIELTDHSGKCECALFGEYVDELNKKMGKSSTGGLPIVVVQFAKVKIFRDKASLQNVLNTTRILINPDIPEAEAFKNSIAVHGIENDAAVPMIGEWPKPSVEDEFLRMHPKKSVGELNNLCDAGVFVVCAQVVRVVDGQDWWYPACKCHKAVVPESGSYFCSACDRCVFQVIPRFRVKIEVTDGKDSCVFVLFDSDVSYMMEKSCAFFVARAKAKIVGPHPIEFDSLVGKKMLFAVDKSVKQSSVGDGSCRVRRVCMNPTIIEEFCGEGGFRTPSKGRSPSIDMDSDGLSDDVDAGEDTPSVEFVKDLIVTPPAASEVEDVDSDGPFIVKRNLSKAFDAAARPKRNTRLKKVKIEMD 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme823g00001 529 Gene3D - 12 117 IPR012340 -
Trme823g00001 529 MobiDBLite consensus disorder prediction 444 468 - -
Trme823g00001 529 SUPERFAMILY Nucleic acid-binding proteins 14 118 IPR012340 -
Trme823g00001 529 CDD RPA1_DBD_B_like 148 248 - -
Trme823g00001 529 Gene3D - 122 259 IPR012340 -
Trme823g00001 529 CDD RPA1_DBD_A_like 27 115 - -
Trme823g00001 529 Gene3D - 281 435 IPR012340 -
Trme823g00001 529 PANTHER OS03G0429900 PROTEIN 16 418 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trme823g00001 529 SUPERFAMILY Nucleic acid-binding proteins 130 255 IPR012340 -
Trme823g00001 529 SUPERFAMILY Nucleic acid-binding proteins 296 409 IPR012340 -
Trme823g00001 529 Pfam Replication factor-A C terminal domain 301 377 IPR013955 -
Trme823g00001 529 Pfam Domain of unknown function DUF223 51 119 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme823g00001 Trme-Chr823 38 2471 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme823g00001 28 361 Core DNA Replication Machinery Family AT4G19130 22.472 4.22e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme823g00001 - - tpra:123904946 697.197