Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme82376g00001 GTTAAAAGTGTTCATTTTTGCCCCACCACTGGCAACTTCACTAGCCGTGATTATCGAGATATTACATCTAATTTGGGTTTGCCCACAGGGTCTGTTTATCCCACAAGGGATGAAAATGGCAATTTACTTGTGACCGAGTATGGATTGTGCAAATACAAGGATCATCAAACCTTGTCCATGCAGGAAGTTCCTGAAAATTCTGCGCCTGGTCAGCTCCCAAGAACAGTGGATGTCATAGCAGAGGATGATCTTGTTGATTCTTGCAAGCCTGGAGATCGTGTGGCTATTGTCGGGATATATAAGGCTCTTCCAGGAAAAAGCAAAGGCAGTGTGAATGGTGTATTCAGGACTGTGCTCATAGCCAACAATGTATCTCTTCTCAACAAAGAGGCTAATGCTCCAATCTACAGCCCTGAAGACCTTAAAAACATTAAAAAGATAGCTGAAAGAGATGATACATTTGATCTTCTTGGTAATTCACTTGCACCTTCTATACATGGACATTCTTGGATAAAGAAAGCAGTGATGTTATTGATGCTTGGTGGAGTGGAGAAGAACTTAAAGAATGGCACTCATTTAAGAGGGTTAGTGCTTTCTCCTT 601 0.416 VKSVHFCPTTGNFTSRDYRDITSNLGLPTGSVYPTRDENGNLLVTEYGLCKYKDHQTLSMQEVPENSAPGQLPRTVDVIAEDDLVDSCKPGDRVAIVGIYKALPGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIHGHSWIKKAVMLLMLGGVEKNLKNGTHLRGLVLSP 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme82376g00001 200 Pfam MCM OB domain 4 103 IPR033762 -
Trme82376g00001 200 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 2 195 IPR031327 GO:0003677|GO:0005524|GO:0032508
Trme82376g00001 200 SUPERFAMILY Nucleic acid-binding proteins 2 123 IPR012340 -
Trme82376g00001 200 Gene3D - 41 131 IPR012340 -
Trme82376g00001 200 ProSiteProfiles MCM family domain profile. 153 197 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trme82376g00001 200 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 45 59 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Trme82376g00001 200 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 71 83 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Trme82376g00001 200 FunFam DNA helicase 1 53 - -
Trme82376g00001 200 SMART mcm 1 200 IPR031327 GO:0003677|GO:0005524|GO:0032508
Trme82376g00001 200 Gene3D - 135 197 IPR027417 -
Trme82376g00001 200 Pfam MCM P-loop domain 141 195 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme82376g00001 1 195 Core DNA Replication Machinery Family AT5G46280 85.641 8.36e-125 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme82376g00001 K02541 - tpra:123891780 393.275