Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme82337g00001 AGAGTTGAAATGGCTCTTGGAATAGCAAGAGGCTTACTCTACTTGCATGAAGAGTGTGAAACACAGATCATACATTGTGATATCAAGCCACAAAATGTGTTACTTGATGCTAATCATGTTGCAAAGATTGCTGATTTTGGACTTTCCAAGCTTTTGAACAAAGATCAAACAAGAACAAATACTAATTTTAGAGGAACAATAGGGTACATAGCACCTGAATGGTTAAGGAGTTCACCTATAACTGCAAAAGTTGATGTTTTCAGCTTTGGTGTTATGCTACTTGAGATTATTTGTTGTAGGAGACATGTTGAATCATATGAGAGTCATGATGAGGATGAAAGAGGAAGTGAAGATGATGATTTGGTTCTTGTTAATTTGGTTCTAAGGTGCATAGTTTCTAAGAAATTGGAGATAGTGGTAAGTGATGACTTGGAAGTAGTCAATGATTTTAAGAGGTTTGAGCAAATGGCTTTGGTTGGATTATGGTGTCTTCATCCAAACCCAACTCTTAGACCTTCAATGAAGAAAGTGACTCAAATGCTAGAGGGAACGGTGGAAGTTGGTGTTCCACCTTTGCTTAATGATGAAACTATGGCAAATTAG 603 0.3698 RVEMALGIARGLLYLHEECETQIIHCDIKPQNVLLDANHVAKIADFGLSKLLNKDQTRTNTNFRGTIGYIAPEWLRSSPITAKVDVFSFGVMLLEIICCRRHVESYESHDEDERGSEDDDLVLVNLVLRCIVSKKLEIVVSDDLEVVNDFKRFEQMALVGLWCLHPNPTLRPSMKKVTQMLEGTVEVGVPPLLNDETMAN 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme82337g00001 200 Gene3D Transferase(Phosphotransferase) domain 1 1 188 - -
Trme82337g00001 200 ProSitePatterns Serine/Threonine protein kinases active-site signature. 23 35 IPR008271 GO:0004672|GO:0006468
Trme82337g00001 200 SMART serkin_6 1 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme82337g00001 200 SUPERFAMILY Protein kinase-like (PK-like) 2 182 IPR011009 -
Trme82337g00001 200 Pfam Protein kinase domain 4 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme82337g00001 200 ProSiteProfiles Protein kinase domain profile. 1 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme82337g00001 200 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 189 - -
Trme82337g00001 200 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme82337g00001 Trme-Chr82337 1 603 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme82337g00001 1 183 Receptor kinase-like Gene Family AT1G71830 42.623 5.74e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trme82337g00001 Pkinase 8.4e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme82337g00001 - - lang:109330973 322.398