Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme82305g00001 ATGGCAGATGCAGAAAGTCCAGCTGGTGGAAGCCACGAAAGTGGTGGCGAACAGAGTCCACATGGTTCTTCTTCTGCTGCGCGTGAACAAGATCGTTACTTGCCTATAGCTAATATAAGCAGAATCATGAAAAAAGCTTTACCTTCAAATGGCAAAATTGCTAAGGATGCTAAAGATACCATGCAAGAATGTGTTTCTGAATTCATCAGTTTTATTACCAGCGAGGCAAGTGAGAAATGCCAGAAAGAGAAGAGAAAGACCATTAATGG 269 0.4201 MADAESPAGGSHESGGEQSPHGSSSAAREQDRYLPIANISRIMKKALPSNGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTING 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme82305g00001 90 SUPERFAMILY Histone-fold 17 90 IPR009072 GO:0046982
Trme82305g00001 90 MobiDBLite consensus disorder prediction 1 33 - -
Trme82305g00001 90 ProSitePatterns NF-YB/HAP3 subunit signature. 64 80 IPR003956 GO:0005634|GO:0006355|GO:0043565
Trme82305g00001 90 PRINTS CCAAT-binding transcription factor subunit A signature 80 90 - -
Trme82305g00001 90 PRINTS CCAAT-binding transcription factor subunit A signature 61 79 - -
Trme82305g00001 90 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 90 IPR027113 GO:0001228|GO:0006355|GO:0016602
Trme82305g00001 90 Gene3D Histone, subunit A 19 90 IPR009072 GO:0046982
Trme82305g00001 90 MobiDBLite consensus disorder prediction 12 26 - -
Trme82305g00001 90 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 33 89 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme82305g00001 Trme-Chr82305 1 552 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme82305g00001 4 90 CCAAT-HAP3 Transcription Factor Family AT2G37060 77.273 1.08e-43 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trme82305g00001 CBFD_NFYB_HMF 6.9e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme82305g00001 K08065 - gmx:100779577 156.377