Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme82269g00001 GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTCTTTCCCAGCATTGTTGGTCGTCCTCGTCACACTGGCGTGATGGTTGGCATGGGTCAAAAAGATGCATATGTTGGTGATGAGGCACAATCTAAGAGGGGTATTTTGACTCTCAAATACCCCATTGAACATGGAATTGTTAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACCTTCTACAATGAGCTTCGTGTTGCCCCAGAAGAGCACCCAGTTCTGCTAACTGAGGCTCCTCTCAACCCTAAGGC 287 0.4878 AGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme82269g00001 96 SUPERFAMILY Actin-like ATPase domain 1 95 IPR043129 -
Trme82269g00001 96 PANTHER ACTIN 2 96 IPR004000 -
Trme82269g00001 96 FunFam Actin, alpha skeletal muscle 16 53 - -
Trme82269g00001 96 Gene3D - 1 96 - -
Trme82269g00001 96 Gene3D Actin; Chain A, domain 2 16 53 - -
Trme82269g00001 96 Pfam Actin 1 95 IPR004000 -
Trme82269g00001 96 PRINTS Actin signature 8 17 IPR004000 -
Trme82269g00001 96 PRINTS Actin signature 31 42 IPR004000 -
Trme82269g00001 96 PRINTS Actin signature 43 65 IPR004000 -
Trme82269g00001 96 FunFam Actin, alpha skeletal muscle 1 96 - -
Trme82269g00001 96 ProSitePatterns Actins signature 1. 35 45 IPR004001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme82269g00001 Trme-Chr82269 1 287 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme82269g00001 1 96 Cytoskeleton Gene Families AT3G12110 100.000 3.84e-68 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme82269g00001 K10355 - zju:107425564 204.527