Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme82264g00001 GGATTGCCGAATTCATGTTCCGATGACAAGCCAAGACACCATTCTGCTTCTGGTCTTACAACCTTGACATGTGCTTTGATCTCTCTAGCATTTGTTGCTGGAACTGCTCTTGTTGCTGGTGGATTTATATTGTATAGGAGATCTTGTAAAGAGAATGAAGCTGCGGTGTGGCGTTCGGTGTTTTTCTATCCTCTGAGAATTACTGAGCATGATCTTGTTATAGGGATGAATGAGAAAAGCTCAATAGGAAATGGAGTTTTTGGTAATGTTTATGTTGTGAGTTTACCTAGTGGTGATTTAGTATCTGTGAAGAAGTTAGTTAAATTTGGAAACCAGTCTTCAAAGAGTTTGAAAGTTGAGGTCAAAACTTTGGCTAAAATTAGGCATAAGAATATTGTTAAGATTCTTGGGTTTTGCCATTCTGATGAGTCAGTTTTTCTTATTTATGAATACTTGCATGGTGGAAGCTTAGGAGACTTGATTTCTAGCCAGAATTTTGAGTTACATTGGGGAGTTAGATTAAGGATTGCTATTGGAGTTGCTCAAGGACTTGCATATCTTCACAAGGATTATGTACCACACTTGGTTCATAGAAATGTCAAGTCAAAGAACATTCTGTTGGATGTTAACTTTGAGCCAAAATTGACACATTTTGCTCTTGATAGGATTGTTGGAGAACCTGCATTTCAATCAACTTTGGATTCTGAAGCTGCATCTTCTTCTTGTTACATTGCTCCAG 739 0.3775 GLPNSCSDDKPRHHSASGLTTLTCALISLAFVAGTALVAGGFILYRRSCKENEAAVWRSVFFYPLRITEHDLVIGMNEKSSIGNGVFGNVYVVSLPSGDLVSVKKLVKFGNQSSKSLKVEVKTLAKIRHKNIVKILGFCHSDESVFLIYEYLHGGSLGDLISSQNFELHWGVRLRIAIGVAQGLAYLHKDYVPHLVHRNVKSKNILLDVNFEPKLTHFALDRIVGEPAFQSTLDSEAASSSCYIAP 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme82264g00001 246 Gene3D Phosphorylase Kinase; domain 1 70 151 - -
Trme82264g00001 246 Gene3D Transferase(Phosphotransferase) domain 1 152 246 - -
Trme82264g00001 246 Pfam Protein kinase domain 77 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme82264g00001 246 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 6 246 - -
Trme82264g00001 246 FunFam probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 67 151 - -
Trme82264g00001 246 ProSiteProfiles Protein kinase domain profile. 76 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme82264g00001 246 SUPERFAMILY Protein kinase-like (PK-like) 78 246 IPR011009 -
Trme82264g00001 246 ProSitePatterns Protein kinases ATP-binding region signature. 82 105 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme82264g00001 Trme-Chr82264 1 739 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme82264g00001 1 246 Receptor kinase-like Gene Family AT5G06940 54.251 2.40e-79 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme82264g00001 Pkinase 7.2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme82264g00001 - - gmx:100794428 410.609