Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme82211g00001 ATTGCACCTGGGATTGAACATTCTGGTGGTGTCCCTGTTCTTGGTCCTCGTGCTAGAGCCACTTTGGAAGAAGATTTTATACGTGATAATCCAAGAAGCACAATTTCAAAGCTTTTGGATTCAGCTGAAGATGGTATGTATGTTGTTATGGCCATAGTTAATGATTTGGTTGAGGGGCAGGATTGGTGGTATCCTGCTTGTCGTTGTCACCGGAGTGTTACTGCTGATTCTGGTGCCTACTTCTGCAAAGGGTGTCAGAAGCATGTATTTCATATGGTTCCTAGGTTTAAAGTTAAACTTCATGTTCGTGATGCAACTGGTGATACAATATTTGTTGTTTTTGACACTGATAT 353 0.4136 IAPGIEHSGGVPVLGPRARATLEEDFIRDNPRSTISKLLDSAEDGMYVVMAIVNDLVEGQDWWYPACRCHRSVTADSGAYFCKGCQKHVFHMVPRFKVKLHVRDATGDTIFVVFDTD 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme82211g00001 117 SUPERFAMILY Nucleic acid-binding proteins 32 115 IPR012340 -
Trme82211g00001 117 Gene3D - 22 117 IPR012340 -
Trme82211g00001 117 Pfam Replication factor-A C terminal domain 48 115 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme82211g00001 Trme-Chr82211 322 762 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme82211g00001 60 117 Core DNA Replication Machinery Family AT5G61000 36.066 3.50e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme82211g00001 - - mtr:11411000 156.762