Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme82192g00001 AGGTTGGGTAATTTGTACTGTGATCCACTGATGGCATGCTCTGGACACAAGATAACTTCTAGGCAGCGTTGGACACCAACGCCTATACAGCTTCAAATACTCGAGCGCATTTTCGATGAAGGCAATGGAACTCCCTCGAAACAGAAGATTAAAGATATAACCAATGAACTCGGTCAACACGGTCAAATATCTGAGACGAATGTTTATAACTGGTTCCAGAATAGAAGAGCTCGTTCAAAGCGCAAGCAATCGGTTCCTACAACAAATCAATCAGAACCAGAGCCGGAGACAGAAGTTGAGTCTCCAAAAGAGAACAAAACACACGAAGAATGCGACCGTGTTCAATTCTTTGAGAATTTATCACCTCATAGTGTCAAGGATATGTACATTCAAAGTCCTGACATAGGATTTGAGCACTTGTTGAGTAAAATTGAAGTTTCAGGCTCCTATAGTTCTTATTTTCTTTGA 468 0.4103 RLGNLYCDPLMACSGHKITSRQRWTPTPIQLQILERIFDEGNGTPSKQKIKDITNELGQHGQISETNVYNWFQNRRARSKRKQSVPTTNQSEPEPETEVESPKENKTHEECDRVQFFENLSPHSVKDMYIQSPDIGFEHLLSKIEVSGSYSSYFL 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme82192g00001 155 SMART HOX_1 19 86 IPR001356 GO:0003677
Trme82192g00001 155 Gene3D - 22 86 - -
Trme82192g00001 155 SUPERFAMILY Homeodomain-like 20 84 IPR009057 -
Trme82192g00001 155 MobiDBLite consensus disorder prediction 76 108 - -
Trme82192g00001 155 CDD homeodomain 21 83 IPR001356 GO:0003677
Trme82192g00001 155 PANTHER WUSCHEL-RELATED HOMEOBOX 13 1 140 IPR044559 GO:0003700
Trme82192g00001 155 Pfam Homeodomain 21 81 IPR001356 GO:0003677
Trme82192g00001 155 ProSiteProfiles 'Homeobox' domain profile. 17 82 IPR001356 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme82192g00001 1 107 Wox Gene Family AT4G35550 69.091 1.16e-47 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Trme82192g00001 Homeodomain 9.6e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme82192g00001 - - gmx:100820530 250.366