Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme82095g00001 AGAGAGAGTGTAGAGAGAGAAGCTGTGGGTTGGAGTGGGAACTCTAGGGCTCCAAATGGAAAACGGAGTGACTACTTTCATCACCTAGACAAGGTGACAACATCCTTCTTCATCACAAATTTCCCGGAGGATGCTACATCGGAAGACCTTTGGAGATGTTTCTTGAAGTTTGGGAGAGTTGGTGAAGTTTACATCCCAAAGAAGTTGGATAAAAGGGGTCGTCGTTTTGGCTTTGTAAAATTCAAGGAGGTCAAGGAGGTGGAGTCTTTATCCGAAAGCTTGAGGGATGTTTGGATGGGAAATTTCAAACTTCGTGTCAATCGCTCGCGGTTTAGTCGATCGGAGAAGAAGGAGGTGCAACCTCCAAAAACTCCTCTGCGTGAGTCAGTTACAGAGTTGGTGGAGATTAAGTCAGGAAGGTCTTTCAAAACAGCCCTTCTTGGCTCCGGTGATGGGGGTTCTGCAGTTGGAGAAAAGATGCGGATCAAGGCTCCGGTGAATGAATCGCTCCACTCAGAGTTGAAGAGTAGTGTGGTTGGAACTCTCGCCCGAGAGAAAGATGTTAGGCGTATTCAAACTACTCTGTTTATGGAGGGTTATAAATCTATTTATGTAACCAATATGGGAGGAAATATGGCCCTTTTGCGCAGTCCAGTCGCTGGTGACGTAGAGAAACTACTCAGGAGCAAAAATGAATGTTTGGAATATTATTTTTCTGAGCTTAAGCCATGGGTTCCAGAGCTTGTTGTGGTGCAGAGAGAG 762 0.4567 RESVEREAVGWSGNSRAPNGKRSDYFHHLDKVTTSFFITNFPEDATSEDLWRCFLKFGRVGEVYIPKKLDKRGRRFGFVKFKEVKEVESLSESLRDVWMGNFKLRVNRSRFSRSEKKEVQPPKTPLRESVTELVEIKSGRSFKTALLGSGDGGSAVGEKMRIKAPVNESLHSELKSSVVGTLAREKDVRRIQTTLFMEGYKSIYVTNMGGNMALLRSPVAGDVEKLLRSKNECLEYYFSELKPWVPELVVVQRE 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme82095g00001 254 CDD RRM_SF 37 107 - -
Trme82095g00001 254 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 33 135 - -
Trme82095g00001 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 111 IPR000504 GO:0003723
Trme82095g00001 254 Gene3D - 33 114 IPR012677 -
Trme82095g00001 254 SMART rrm1_1 35 107 IPR000504 GO:0003723
Trme82095g00001 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 103 IPR000504 GO:0003723
Trme82095g00001 254 SUPERFAMILY RNA-binding domain, RBD 29 115 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme82095g00001 Trme-Chr82095 2 763 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme82095g00001 31 110 Eukaryotic Initiation Factors Gene Family AT1G34140 31.250 1.96e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme82095g00001 K12891 - vvo:131658712 74.7146