Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8207g00001 TTTAAAATGTCAGATGAGGATGAGTATCGTTGTTTTGTTGGTGGCCTTGCATGGTCAACTTCTGATAGAAAGTTAAAGGATACATTTGAAAAATTTGGCAAGCTTACCGAGGCCAAGGTGGTTGTTGATAAATTCTCTGGACGCTCTCGCGGTTTTGGATTTGTTACATTTGATGAAAAGAAAGCAATGGAAGATGCTATTGATGCTATGAATGGGATAGATTTAGATGGCCGAACTATTACTGTTGATAAAGCTCAGCCTCAACAAGGATCAAATAGAGATGATGGTGATCGCTACCGAGAACGTGNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNGAGGTGGAGGTGGTCGAGGATCTAGTGATGGAGGATGCTTTAATTGTGGTAAGCCTGGTCATTTTGCTAGGGAGTGCCCTAGTGAAGGGGGGAGAGGGGGAAGGTATGGTGGCAGAGAAAGTAGATATGGTGGAAGCGGTGGTGGTGGTGGTCACTATGGTCCAGATAGAAATGGAGATCGTTCTTCTGGCGGTCGCAGCAGGGATGGTGGTAGTCGTGGAGATTCTGGAAATGATCGATACTATCGTGATCGTGACCGTGCTGGACCCTTTGAAATCAAAGGGGTTGCTGCTGATGATTCAACTTTATTTTTCGTTCACAATGTTCTGGGATTGTTGTTTGAATGGACCACTGATACCAGTGTTTTGATATGCAATACTTGGCACCTTTGTTAG 744 0.4194 FKMSDEDEYRCFVGGLAWSTSDRKLKDTFEKFGKLTEAKVVVDKFSGRSRGFGFVTFDEKKAMEDAIDAMNGIDLDGRTITVDKAQPQQGSNRDDGDRYRERXXXXXXXXXXXXXXXGGGGRGSSDGGCFNCGKPGHFARECPSEGGRGGRYGGRESRYGGSGGGGGHYGPDRNGDRSSGGRSRDGGSRGDSGNDRYYRDRDRAGPFEIKGVAADDSTLFFVHNVLGLLFEWTTDTSVLICNTWHLC 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8207g00001 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Trme8207g00001 247 MobiDBLite consensus disorder prediction 78 201 - -
Trme8207g00001 247 Gene3D - 2 95 IPR012677 -
Trme8207g00001 247 SUPERFAMILY Retrovirus zinc finger-like domains 116 148 IPR036875 GO:0003676|GO:0008270
Trme8207g00001 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Trme8207g00001 247 SUPERFAMILY RNA-binding domain, RBD 4 100 IPR035979 GO:0003676
Trme8207g00001 247 CDD RRM2_NsCP33_like 10 85 - -
Trme8207g00001 247 Gene3D - 121 184 - -
Trme8207g00001 247 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 3 208 - -
Trme8207g00001 247 Pfam Zinc knuckle 128 144 IPR001878 GO:0003676|GO:0008270
Trme8207g00001 247 SMART c2hcfinal6 128 144 IPR001878 GO:0003676|GO:0008270
Trme8207g00001 247 ProSiteProfiles Zinc finger CCHC-type profile. 129 144 IPR001878 GO:0003676|GO:0008270
Trme8207g00001 247 SMART rrm1_1 10 83 IPR000504 GO:0003723
Trme8207g00001 247 MobiDBLite consensus disorder prediction 175 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8207g00001 Trme-Chr8207 163 1330 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8207g00001 11 86 Eukaryotic Initiation Factors Gene Family AT1G49760 39.474 3.79e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8207g00001 - - gmx:100815224 253.062