Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme819g00001 ATGGGACACAAAAAGCGAAACTCTGTTCCACGTTCCAAACTATCGCCGGCGGCTTCTCCGGTGGCTCAATCCCCCATCGGCGGAGCCGCCAATGGTTCTACTTCACCCGAGGCCGATTCAATCATTCTTTTCGATCAAAATCTCACTAACCCTAGCAAGATCGAATTAGTTTCTCCTCAATCTGAGGGTTCCGATTTCTCTGCAATTAAGGTAGAATGTGAGCGAGCCCTAACCACGTTTCGCCGTGGGAATCATAATAGAGCAATGAAGCTTATGAAGGAGTTGTGCTTGAAGGAGGATGGTTCGCCTTACTCCGCTTTCGTTTATCGAATTCATGGGTTTATATGTTTCAAAGTGGCTTCCATTATTACTGATTGTAGTGCCAAGCAGCGGCATTTGAAGCATGCTGTTGAATCGGCGCGGAGAGCTGTTGAGCTTTCGCCGAATTCGATTGAGTATGCACATTTTCATGCCACTGTGATGTTGGAAGCAGCCACTGAGGGGAAGGATTATGAGGATGTGGTGCACGAGTGTGAGAGAGGGCTTGCTATTGAAAACCCGAATGATCCTGCTAAGGAGACATTGCAGGATGAGAGCGAGCAGAAAGTGTCTAGTTTGGAAGATCGGATATTACATGTGCAGGCTGAGTTGAGGCAGCTGATTCAGAAGTCAAACATAGCTTCATTGTCGTCTTGGATGAAAAATCTGAGTAATGGGGAAGAGAGGTTTCGGTTGATTCCTATAAGGAGGGCTACAGAGGACCCTATGGAGGTTAGGTTGGTTCAGACTAGAAGGCCAAATGAGATTAAGAAGGTGACCAAGACTCCCGAGGAAAGAAGAAAAGAGATCGAAGTAAGGGTAGCTGCTGCAAGGCTGTTGCAGCAGCAGTCAGAGTCACCCCAGTCCCCGAATGAAGGAGATAGGGATGACAGAGCATTGGATGTGTCTGCAGGGTCTAGTCAGAGGGTAGGTGAGAGGCGAAGGCATGTGAGAAACAATGGCTCTTCAGCCGAAAGGAGAAAGTGGGTGCTAACTTATTGGGATTCACTAAGTATGGATGTGAAGAAGGACTGGCTTAGGATTAAAATATCTGATATCATGTCCCACTTTGGCTCTACAAAGGATACTTTACCGAAAGATGTTTTATCAGAAGCTTTGTTTTATGCTGAAGCCAATAAAACATGGAAATTTTGGAATTGCGGCATTTGTGCTGAGAAATTTCCCAATCAGGAATTTCATAGGCAGCATGTTATGCATGTGCACCTTCAGACTCTCTCGCCAAAAATGCAGAGACTTTTGCCTCAACATGTCGACAATGAATGGATTGAGATGATTCTTAATTGTTCTTGGAAGCCTTTGGATGTCTCAGCTGCAGTTAAAATGATTGACTATAAAGCAAAACTGAAAGGTCCATCACTTCCAGAGGATTATCTTACTCAGGACTACAATGATTGTTTTAAAGATTCAAGCAGCTCTTACCACGAAAAGGAAAGTTTAGGGTACAGTATTGGTAATTGTATGACCGAAAGCAGTAAGTTTTATAAAAATGCTGAAAGTGATGCCAAAGAAGGCATTGAAGACCAACAGTTTATGGCAAATCCCGTTACTGATTGTTGGCCAGTATCTGATGACAAGGAGCGTGCAAAACTTCTAGAGAAAATCCATGGAGTATTTGAGATACTTATTAGACACAAATGTCTTGCTGCTAGTCATCTTCACAAAGTCATACAATTTAGTATGGGTGAGATCCAGGGTCTTGCTGCTGGTTCTGAACTTCTAAAACATGATGTAGACCAAACACCAATGTGTATATGCTTTCTGGGAGCTTCACAACTTAAGAAAATTCTCCAGTTTCTGCAGGAAATGTCTCATGCTTGTGGGTTGGGTAGATATTCTGATAAAAGTAGTAGTCCCAAGAATGATTTGCATGATATTAGTCAAGGTCCTGAAATTAAAGATAAAATTGTTCTCAATGGAGATGCATCATGCCTTCTCTTGGATGAGTGTCTACTGCCAACACAAGTCACTCCTGGTACAGCCCAGGAGGCTGTCTTCGAGGACATGGTCACCCCAAGTTCTCCTGATGGAATTTCAGACAATAGTGGTGCTTGGCTGTCCTGGCTATATTCAAGTCGGCCTATTGGGGATCAGTTGACGTCATGGATTCGGACCAAAGAAGATAAAACATGTCAAGGACAAGAAATGGTCCGGACACTTGACAAGGAGTTTTACCAATTACATAGCCTGTGCCAGAAGAAGTGTGACCGTATAAGTTATGAGGAAGCACTACAGACAATAGAGGATCTTTGTCTTGAAGAAGGTAAGAAGAGGGAAAATGTGGGAGAATTTGTGCAGCGAAGCTATGAGTCTGTCTTAAAAAGGCGGAGAGAAGAGCTTGCTGAGAGTGAGAATGAAATGATGTATGCTGGCAATAGGTTTGAGATGGATTGTATATCAAATGTTTTGCAAGAAGCAGAAGCGATGAATGTTAATCAATTTGGCTATGAGGAAACTTATACTGGTGTGACTTCTCAGTTATGTGACTTGGAATCCGGTGAAGATGATGAATGGAGAATGAAGGACTGTTTGCACCAAATGGATGGCTGTATAGAAATTGCTATTCAGAAACTGAAAGAGCACTCGTCTATAGAGATTAGCAAAGTCGATGCGGAAATAATTAAATGTGTTTCAGAGGTGCAGCAATTGGAACTCAAGCTTGGGCACGTTTCTGCCAATGATTATCGAGCAATAATAGTGCCTCTAGTGAAGTCGTACCTAAAGACACTTTTGGAAGATTTGGCTGAGAAAGATGCAAGGGAGAAATCTGATGCTGCAGGTGAAGCATTTTTGGCCGAACTTGCTCTTGATTCCAAGAAGATTAGCAAAGGGGGAAATGAGAACACAAGACATGTGGAGAAGACAAAGGATAAGAAGAAGAATAAAGATCACAGGAAAACAAGAGATTTGAAGGCCACAAGTGGTCCTATGCATCCCTTGCTTCAGTCTACAACTCTTGATTCTGATCTGGTATCACCTGATAGTGACTTTCAAGATCATGAGGTTGTTTCTATGAATGAGGATGATTTGGAACACCACGAAGAGGAATTTAGACGTAAAATTGAGCTTGAAGAGGAGGAAAAAAAGCTTGAAGAAACCTTGGAACTTCAACGGAGGATTGAAAATGAGGCCAAACAGAAACACCTTGCTGAGCAACAGAAGAAATTATCTGGTACTTGTGTAGAGGAAGTGACAGATAAACTTCA 3263 0.4269 MGHKKRNSVPRSKLSPAASPVAQSPIGGAANGSTSPEADSIILFDQNLTNPSKIELVSPQSEGSDFSAIKVECERALTTFRRGNHNRAMKLMKELCLKEDGSPYSAFVYRIHGFICFKVASIITDCSAKQRHLKHAVESARRAVELSPNSIEYAHFHATVMLEAATEGKDYEDVVHECERGLAIENPNDPAKETLQDESEQKVSSLEDRILHVQAELRQLIQKSNIASLSSWMKNLSNGEERFRLIPIRRATEDPMEVRLVQTRRPNEIKKVTKTPEERRKEIEVRVAAARLLQQQSESPQSPNEGDRDDRALDVSAGSSQRVGERRRHVRNNGSSAERRKWVLTYWDSLSMDVKKDWLRIKISDIMSHFGSTKDTLPKDVLSEALFYAEANKTWKFWNCGICAEKFPNQEFHRQHVMHVHLQTLSPKMQRLLPQHVDNEWIEMILNCSWKPLDVSAAVKMIDYKAKLKGPSLPEDYLTQDYNDCFKDSSSSYHEKESLGYSIGNCMTESSKFYKNAESDAKEGIEDQQFMANPVTDCWPVSDDKERAKLLEKIHGVFEILIRHKCLAASHLHKVIQFSMGEIQGLAAGSELLKHDVDQTPMCICFLGASQLKKILQFLQEMSHACGLGRYSDKSSSPKNDLHDISQGPEIKDKIVLNGDASCLLLDECLLPTQVTPGTAQEAVFEDMVTPSSPDGISDNSGAWLSWLYSSRPIGDQLTSWIRTKEDKTCQGQEMVRTLDKEFYQLHSLCQKKCDRISYEEALQTIEDLCLEEGKKRENVGEFVQRSYESVLKRRREELAESENEMMYAGNRFEMDCISNVLQEAEAMNVNQFGYEETYTGVTSQLCDLESGEDDEWRMKDCLHQMDGCIEIAIQKLKEHSSIEISKVDAEIIKCVSEVQQLELKLGHVSANDYRAIIVPLVKSYLKTLLEDLAEKDAREKSDAAGEAFLAELALDSKKISKGGNENTRHVEKTKDKKKNKDHRKTRDLKATSGPMHPLLQSTTLDSDLVSPDSDFQDHEVVSMNEDDLEHHEEEFRRKIELEEEEKKLEETLELQRRIENEAKQKHLAEQQKKLSGTCVEEVTDKL 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme819g00001 1087 MobiDBLite consensus disorder prediction 996 1011 - -
Trme819g00001 1087 MobiDBLite consensus disorder prediction 292 334 - -
Trme819g00001 1087 Pfam Protein of unknown function (DUF629) 345 871 IPR006865 -
Trme819g00001 1087 ProSitePatterns Zinc finger C2H2 type domain signature. 400 421 IPR013087 -
Trme819g00001 1087 MobiDBLite consensus disorder prediction 303 334 - -
Trme819g00001 1087 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1079 - -
Trme819g00001 1087 Gene3D Tetratricopeptide repeat domain 66 209 IPR011990 GO:0005515
Trme819g00001 1087 Coils Coil 785 805 - -
Trme819g00001 1087 MobiDBLite consensus disorder prediction 961 1015 - -
Trme819g00001 1087 Pfam Protein of unknown function (DUF627) 75 186 IPR006866 -
Trme819g00001 1087 Coils Coil 1026 1072 - -
Trme819g00001 1087 Coils Coil 196 223 - -
Trme819g00001 1087 MobiDBLite consensus disorder prediction 1 35 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme819g00001 65 1087 C2H2 Transcription Factor Family AT3G47890 52.454 0.0 1011
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme819g00001 - - gmx:100799759 1555.04