Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme81899g00001 ATGAAATTGCAGTTGCTTATCGAGTTAGATGGCGCTGAGCAGCGGAGAGGCGTTTTTGTGATTGGTGCAACAAATAGGCCTGAGGTGATGGACCGCGCTCTCTTACGGCCTGGCAGGTTTGGTAAACTGCTTTATGTTCCTCTTCCAAGTCCAGATGACCGTGTTTTGATATTGAAAGCTCTTGCAAGAAATAAACATATTGATTCTAGTGTGGATTTGAGTGCCATTGGAAGAATGGAAGCATGTGAAAACCTTAGTGGTGCTGATCTTGCAGAATTGATGAACGAAGCAGTAATGGCTGCTCTTGATGAGAAGTTGGCCTCAATTGAGACAACTTGCGAATCATTGACCATTAGGACAAGTCATTTTGAAGTAGCACTAAGTAAAGTTTCTCCATCTGTGTCGGACAAG 411 0.4355 MKLQLLIELDGAEQRRGVFVIGATNRPEVMDRALLRPGRFGKLLYVPLPSPDDRVLILKALARNKHIDSSVDLSAIGRMEACENLSGADLAELMNEAVMAALDEKLASIETTCESLTIRTSHFEVALSKVSPSVSDK 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme81899g00001 137 Coils Coil 99 119 - -
Trme81899g00001 137 ProSitePatterns AAA-protein family signature. 18 36 IPR003960 GO:0005524|GO:0016887
Trme81899g00001 137 Gene3D - 1 49 IPR027417 -
Trme81899g00001 137 PANTHER AAA-FAMILY ATPASE 4 136 - -
Trme81899g00001 137 Pfam AAA+ lid domain 70 111 IPR041569 -
Trme81899g00001 137 Pfam ATPase family associated with various cellular activities (AAA) 4 47 IPR003959 GO:0005524|GO:0016887
Trme81899g00001 137 Gene3D - 50 137 - -
Trme81899g00001 137 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 135 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme81899g00001 Trme-Chr81899 145 737 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme81899g00001 4 133 Calmodulin-binding Proteins AT3G56690 43.077 1.37e-23 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme81899g00001 K14571 - gmx:100809594 221.09