Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8186g00001 ATGGTGGATAATGTTTTTCCCTCTTTTCAGGTTCCTAAAGTTGATAAGATTGTGGTAAACTGTGGTATTGGAGAAGCTGCACAAAATGCAAAAGGTTTGGATGCAGCAATTAATGATCTAGCACTGATCACTGGACAGAGACCTGTTAAGACTCGGGCGAGGAATTCTGTTGCCACCTTTAAGATCAGGGAAGGTCAACCACTTGGGATTGCTGTGACACTCAGAGGAAAAATAATGTACTCATTCCTAGACCGCGTTATCAACTTAGGGCTTCCTAGGACAAGAGATTTTCAAGGTTTGAGTATCAGCAGCTTTGATGGGAACGGGAATTTCAACATTGGTATTAAGGACCAAACTGTGTTCCCAGAGCTGAAATCTGGTTTTGGTACACCTAGAGGAATGGATGTCTGCATCTCAACAACTGCTAAAACTGATCAAGAAGGACAAAAATTATTGGCTCTTATGGGCATGCCCTTCAGAGAGGGAGTTGAAAATACCCAAATAGTTCGCAAAAAGAAGTTGAAGTCTCATCATTTTGATGCAAAATCAAAGGGTAGAGGAGATAGAGCAAGGAAGTAA 579 0.4145 MVDNVFPSFQVPKVDKIVVNCGIGEAAQNAKGLDAAINDLALITGQRPVKTRARNSVATFKIREGQPLGIAVTLRGKIMYSFLDRVINLGLPRTRDFQGLSISSFDGNGNFNIGIKDQTVFPELKSGFGTPRGMDVCISTTAKTDQEGQKLLALMGMPFREGVENTQIVRKKKLKSHHFDAKSKGRGDRARK 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8186g00001 192 Pfam ribosomal L5P family C-terminus 67 159 IPR031309 -
Trme8186g00001 192 Hamap 50S ribosomal protein L5 [rplE]. 2 161 IPR020930 GO:0003735|GO:0005840|GO:0006412
Trme8186g00001 192 Gene3D - 5 161 IPR022803 -
Trme8186g00001 192 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 9 165 IPR002132 GO:0003735|GO:0005840|GO:0006412
Trme8186g00001 192 SUPERFAMILY RL5-like 8 160 IPR022803 -
Trme8186g00001 192 FunFam 50S ribosomal protein L5 3 161 - -
Trme8186g00001 192 ProSitePatterns Ribosomal protein L5 signature. 40 56 IPR020929 GO:0003735|GO:0005840|GO:0006412
Trme8186g00001 192 Pfam Ribosomal protein L5 10 63 IPR031310 -
Trme8186g00001 192 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 4 168 IPR002132 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8186g00001 Trme-Chr8186 203 1599 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8186g00001 13 118 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 31.132 2.06e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8186g00001 K02931 - pvy:116112842 291.582