Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme81773g00001 ATGCTGGGTGAGAATCTGTACCCCCTTGTGGAACAATTGGAGCCTGACAATGCTGCCAAAGTTACTGGCATGCTTCTGGAGATGGACCAGACTGAAGTTCTGCACTTGCTTGAGTCACCAGAGGCCCTGAAAGCAAAGGTGGCAGAGGCAATGGACGTCCTTAGGAATGTTGCGCAGCAGCAGGCTGGTGGTGCTGCTGATCAGCTGTCTTCATTGTCACTCAATGACAGCCTTGCTTCTTAA 243 0.5144 MLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQAGGAADQLSSLSLNDSLAS 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme81773g00001 80 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 1 59 IPR002004 GO:0003723
Trme81773g00001 80 FunFam Polyadenylate-binding protein 1 60 - -
Trme81773g00001 80 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UBR5 2 62 - -
Trme81773g00001 80 SMART poly_2 1 57 IPR002004 GO:0003723
Trme81773g00001 80 SUPERFAMILY PABC (PABP) domain 1 72 IPR036053 GO:0003723
Trme81773g00001 80 Gene3D - 1 61 - -
Trme81773g00001 80 Pfam Poly-adenylate binding protein, unique domain 1 54 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme81773g00001 Trme-Chr81773 359 601 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme81773g00001 1 78 Eukaryotic Initiation Factors Gene Family AT1G49760 89.744 1.78e-41 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme81773g00001 K13126 - gmx:100813735 127.102