Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme817639g00001 GTTGGTGGAGGGAGATTTGTGATACATATAAAGGAAGGGGTTTATGAAGAGAGGGTTAGGGTTCCGTTAAGGAAGAAGAATGTTGTGTTTTTGGGTGATGGCATTGGGAAGACTGTCATCACTGGCTCTGCTAGTGTCGGATTAATGGCGGGGATGACAACCTATAACTCTGCCACAGTAGGTAAGTTTGTTTTGTTTAAGGTTTATTCATGCAAGATTACTTGA 225 0.4222 VGGGRFVIHIKEGVYEERVRVPLRKKNVVFLGDGIGKTVITGSASVGLMAGMTTYNSATVGKFVLFKVYSCKIT 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme817639g00001 74 PANTHER PECTINESTERASE 5 61 - -
Trme817639g00001 74 Gene3D - 2 73 IPR012334 -
Trme817639g00001 74 Pfam Pectinesterase 4 61 IPR000070 GO:0030599|GO:0042545
Trme817639g00001 74 SUPERFAMILY Pectin lyase-like 3 60 IPR011050 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme817639g00001 5 61 Carbohydrate Esterase AT5G64640 73.684 1.47e-22 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme817639g00001 - - cave:132166339 99.3673